Revision history for App-Fasops

0.5.7 2016-12-17T04:57:15Z
    - Add `fasops check`

0.5.6 2016-12-16T10:30:10Z
    - Fix unknown SNPs
    - Add snp_ prefix to get_snps() and polarize_snp()

0.5.5 2016-12-16T02:52:25Z
    - Switch to Minilla
    - Improve test coverage
    - Without outgroups, consider indels occurred at target

0.5.4  2016-12-15 03:13:17 CST
    - Add `fasops xlsx`
    - show_defaults => 1 for all commands

0.5.3  2016-12-14 05:41:39 CST
    - Add get_snps(), polarize_snp()
    - Add get_indels(), polarize_indel()
    - Merge xt/11-refine.t to t/

0.5.2  2016-12-12 02:06:09 CST
    - Bring Perl 5.10 back

0.5.1  2016-12-09 21:51:44 CST
    - Drop Perl 5.10

0.5.0  2016-12-09 21:22:25 CST
    - Read from stdin

0.4.13  2016-07-07 22:32:08 CST
    - Add codecov badge

0.4.12  2016-06-30 16:35:03 CST
    - Speed up Common::read_fasta()

0.4.11  2016-06-26 03:46:35 CST
    - Fix command refine with --chop

0.4.10  2016-06-26 03:20:10 CST
    - Add --chop to command refine

0.4.9  2016-06-25 22:03:35 CST
    - Merge command multilinks into links

0.4.8  2016-06-21 06:11:14 CST
    - Add --best to command links
    - Command multilinks

0.4.7  2016-06-19 04:06:59 CST
    - App::RL::Common::decode_header() changed

0.4.6  2016-05-30 21:31:20 CST
    - Improve command refine following guides provided by Mario Roy.

0.4.5  2016-05-24 22:33:02 CST
    - Better prompts

0.4.4  2016-05-24 08:36:40 CST
    - Clean prompts

0.4.3  2016-05-21 19:47:58 CST
    - Parallelise command refine

0.4.2  2016-05-14 03:54:19 CST
    - Add `fasops join`
    - Add --required to command subset
    - Add --chr to command split

0.4.1  2016-05-12 22:44:56 CST
    - Add --length to command slice
    - Add --length and --trim to command covers

0.4.0  2016-05-12 03:40:52 CST
    - Specify versions of dependencies

0.3.14  2016-05-12 02:15:06 CST
    - Add `fasops slice`

0.3.13  2016-05-10 21:00:06 CST
    - `fasops refine --outgroup --quick`

0.3.12  2016-05-09 17:14:03 CST
    - Fix ref_pair_D

0.3.11  2016-05-08 20:02:14 CST
    - Move subs from AlignDB::Util

0.3.10  2016-05-07 17:30:24 CST
    - codecov

0.3.9  2016-05-07 14:15:37 CST
    - Export nothing. Remove duplicated functions
    - Add strict and warnings to every modules

0.3.8  2016-05-05 00:26:00 CST
    - move 11-refine.t to xt/

0.3.7  2016-05-04 01:27:07 CST
    - Add `fasops refine`

0.3.6  2016-04-08 15:06:47 CST
    - Require 5.10

0.3.5  2016-04-08 15:01:07 CST
    - Add travis-ci

0.3.4  2016-02-27 01:57:33 CST
    - `fasops replace` remove blocks

0.3.3  2016-02-07 11:43:35 CST
    - Fix warnings

0.3.2  2016-01-15 17:18:28 CST
    - A real Changes file

0.3.1  Thu Jan  7 02:12:28 2016
    - Add --size for `fasops axt2fas`

0.2.9  Mon Dec 28 17:02:40 2015
    - Common functions
    - Add `fasops links`
    - Add `fasops replace`

0.2.6  Mon Dec 28 09:31:35 2015
    - Change regex in App::Fasops::decode_header()

0.2.5  Sun Dec 27 21:11:13 2015
    - Tests for `fasops separate`

0.2.4  Fri Dec 25 02:22:41 2015
    - Rewrite axt2fas and maf2fas

0.2.3  Thu Dec 24 23:24:10 2015
    - Add `fasops covers`
    - split and names accept more than one files

0.2.2  2015-12-24 22:09:28 CST
    - Fix `fasops split`
    - Add `fasops separate`

0.2.1  2015-10-28 19:19:10 CST
    - Add license

0.2.0  2015-07-31 02:49:59 CST
    - Convert to Dist::Milla

0.1.0  2015-04-13 00:00:00 CST
    - Now useful