River stage zero
No dependents
Bio-BPWrapper-1.15 wrappers of popular BioPerl classes (`Bio::SeqIO`, `Bio::Seq`, `Bio::AlignIO`, `Bio::SimpleAlign
27 Feb 2024 16:55:31 UTC
River stage two
• 3 direct dependents
• 10 total dependents
Bio-DB-NCBIHelper-1.7.8 A collection of routines useful for queries to NCBI databases.
15 Dec 2023 04:25:18 UTC
River stage zero
No dependents
Mashtree-1.4.6 functions for Mashtree databasing
03 Nov 2023 14:03:17 UTC
River stage zero
No dependents
Bio-ToolBox-1.691 Tools for querying and analysis of genomic data
13 Oct 2022 18:07:52 UTC
River stage zero
No dependents
Bio-DB-USeq-0.26 Read USeq archive database files
24 Sep 2022 02:31:45 UTC
River stage one
• 1 direct dependent
• 1 total dependent
Task-MasteringPerl-1.006 Modules used in Mastering Perl, 2nd Edition
23 Jan 2021 20:59:44 UTC
River stage zero
No dependents
Bio-GeneDesign-5.56 Functions for the design of synthetic genes
19 Jun 2020 16:50:54 UTC
River stage zero
No dependents
Bio-EUtilities-1.77 BioPerl low-level API for retrieving and storing data from NCBI eUtils
09 Mar 2020 18:59:57 UTC
River stage zero
No dependents
Bio-DB-Taxonomy-sqlite-1.7.3 SQLite-based implementation of Bio::DB::Taxonomy::flatfile
02 Mar 2020 05:53:54 UTC
River stage zero
No dependents
Bio-DB-SeqFeature-1.7.4 Normalized feature for use with Bio::DB::SeqFeature::Store
09 Jan 2020 04:03:49 UTC
River stage one
• 2 direct dependents
• 2 total dependents
Bio-DB-GFF-1.7.4 Storage and retrieval of sequence annotation data
08 Jan 2020 20:41:58 UTC
River stage two
• 1 direct dependent
• 14 total dependents
Bio-Variation-1.7.5 BioPerl variation-related functionality
06 Jan 2020 19:59:16 UTC
River stage one
• 1 direct dependent
• 8 total dependents
Bio-DB-RefSeq-1.7.4 Database object interface for RefSeq retrieval
07 Dec 2019 22:10:26 UTC
River stage one
• 1 direct dependent
• 8 total dependents
Bio-DB-SwissProt-1.7.4 Database object interface to SwissProt retrieval
07 Dec 2019 22:09:00 UTC
River stage zero
No dependents
Bio-Tradis-1.4.5 Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses. For more information on the TraDIS method, see http://genome.cshlp.org/content/19/12/2308
04 Dec 2019 14:41:26 UTC
River stage one
• 6 direct dependents
• 7 total dependents
Bio-Procedural-1.7.4 Simple low-dependency procedural interfaces to BioPerl
29 Nov 2019 20:57:49 UTC
River stage zero
No dependents
Bio-Roary-3.13.0 Create a pan genome
06 Nov 2019 21:32:21 UTC
River stage zero
No dependents
Bio-RNA-RNAaliSplit-v0.11 Split and deconvolute structural RNA multiple sequence alignments
26 Aug 2019 21:13:29 UTC
River stage one
• 1 direct dependent
• 1 total dependent
Bio-DB-HTS-3.01 Perl interface to HTS library for DNA sequencing
23 Apr 2019 13:51:11 UTC
River stage one
• 1 direct dependent
• 8 total dependents
Bio-DB-EMBL-1.7.4 Database object interface for EMBL entry retrieval
04 Mar 2019 05:02:40 UTC
River stage one
• 2 direct dependents
• 2 total dependents
BioPerl-Run-1.007003 BioPerl-Run - wrapper toolkit
08 Feb 2019 19:55:33 UTC
River stage zero
No dependents
Bio-ViennaNGS-v0.19.2 A Perl distribution for Next-Generation Sequencing (NGS) data analysis
11 Dec 2018 13:25:00 UTC
River stage zero
No dependents
Bio-AutomatedAnnotation-1.182770 Automated annotation of assemblies
04 Oct 2018 13:47:56 UTC
River stage two
• 1 direct dependent
• 13 total dependents
Bio-Cluster-1.7.3 BioPerl cluster modules
01 Oct 2018 04:35:53 UTC
River stage one
• 1 direct dependent
• 8 total dependents
Bio-Tools-Run-RemoteBlast-1.7.3 Object for remote execution of the NCBI Blast via HTTP
25 Sep 2018 04:48:13 UTC
River stage two
• 2 direct dependents
• 12 total dependents
Bio-ASN1-EntrezGene-1.73 Regular expression-based Perl Parser for NCBI Entrez Gene.
25 Sep 2018 02:32:11 UTC
River stage zero
No dependents
Bio-Tools-Gel-1.7.3 Calculates relative electrophoretic migration distances
25 Sep 2018 01:48:58 UTC
River stage zero
No dependents
Bio-PhyloNetwork-1.7.3 Module to compute with Phylogenetic Networks
25 Sep 2018 01:36:59 UTC
River stage zero
No dependents
Bio-SeqIO-excel-1.7.3 sequence input/output stream from a MSExcel-formatted table
25 Sep 2018 01:30:22 UTC
River stage zero
No dependents
Bio-TreeIO-svggraph-1.7.3 A simple output format that converts a Tree object to an SVG output
25 Sep 2018 01:27:35 UTC
River stage zero
No dependents
Bio-Tree-Draw-Cladogram-1.7.3 Drawing phylogenetic trees in Encapsulated PostScript (EPS) format.
25 Sep 2018 01:26:07 UTC
River stage zero
No dependents
Bio-Draw-Pictogram-1.7.3 generate SVG output of Pictogram display for consensus motifs
25 Sep 2018 01:19:29 UTC
River stage zero
No dependents
Bio-SearchIO-hmmer-1.7.3 A parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam)
25 Sep 2018 00:26:52 UTC
River stage zero
No dependents
Bio-DB-TFBS-1.7.3 Access to a Transcription Factor Binding Site database
25 Sep 2018 00:20:12 UTC
River stage one
• 1 direct dependent
• 1 total dependent
Bio-Align-Graphics-1.7.3 Graphic Rendering of Bio::Align::AlignI Objects
25 Sep 2018 00:17:21 UTC
River stage one
• 1 direct dependent
• 1 total dependent
Bio-AlignIO-stockholm-1.7.3 stockholm sequence input/output stream
25 Sep 2018 00:14:27 UTC
River stage zero
No dependents
Bio-DB-Ace-1.7.3 Database object interface to ACeDB servers
25 Sep 2018 00:11:27 UTC
River stage zero
No dependents
Bio-NeXMLIO-1.7.3 stream handler for NeXML documents
11 Sep 2018 18:47:25 UTC
River stage zero
No dependents
Bio-Tools-Run-Alignment-Clustalw-1.7.4 Object for the calculation of a multiple sequence alignment from a set of unaligned sequences or alignments using the Clustalw program
11 Jul 2018 14:57:04 UTC
River stage zero
No dependents
Bio-Tools-Run-Alignment-TCoffee-1.7.4 Object for the calculation of a multiple sequence alignment from a set of unaligned sequences or alignments using the TCoffee program
09 Jul 2018 18:31:30 UTC
River stage one
• 1 direct dependent
• 1 total dependent
Bio-Tools-Phylo-PAML-1.7.3 Parses output from the PAML programs codeml, baseml, basemlg, codemlsites and yn00
01 Jul 2018 12:36:38 UTC
River stage zero
No dependents
Bio-SearchIO-blastxml-1.70 A SearchIO implementation of NCBI Blast XML parsing.
04 Jan 2018 02:12:33 UTC
River stage zero
No dependents
PrimerView-1.3.0.1 batch and single primer sequence maps
09 Jul 2017 17:48:17 UTC
River stage zero
No dependents
Bio-MLST-Check-2.1.1706216 Multilocus sequence type checking using blast
03 Mar 2017 16:23:59 UTC
River stage zero
No dependents
GBrowse-2.56 The GMOD Generic Genome Browser
15 Jan 2017 21:29:11 UTC
River stage one
• 2 direct dependents
• 2 total dependents
Bio-Graphics-2.40 Generate GD images of Bio::Seq objects
16 Dec 2016 04:50:36 UTC
River stage one
• 1 direct dependent
• 3 total dependents
Bio-Coordinate-1.007001 Methods for dealing with genomic coordinates.
15 Dec 2016 05:03:14 UTC
River stage zero
No dependents
PrimerMap-1.3 Primer map from sequence and primer positions
06 Dec 2016 15:41:59 UTC
River stage zero
No dependents
Bio_AssemblyImprovement-1.160490 Improve an assembly by scaffolding, contig ordering and gap closing.
18 Feb 2016 10:10:42 UTC
River stage zero
No dependents
Bio-SamTools-1.43 Perl interface to SamTools library for DNA sequencing
12 Feb 2016 19:33:32 UTC