Distributions Which Depend on BioPerl
River gauge Release Uploaded
River stage zero No dependents Mashtree-0.33 Create a tree using Mash distances. 21 May 2018 20:21:25 GMT
River stage one • 1 direct dependent • 1 total dependent Bio-DB-HTS-2.11 Perl interface to HTS library for DNA sequencing 30 Apr 2018 16:08:05 GMT
River stage zero No dependents Bio-ToolBox-1.54 Tools for querying and analysis of genomic data 02 Mar 2018 04:34:36 GMT
River stage zero No dependents Bio-RNA-RNAaliSplit-v0.06 Split and deconvolute structural RNA multiple sequence alignments 28 Feb 2018 17:44:39 GMT
River stage zero No dependents Bio-ViennaNGS-v0.18 A Perl distribution for Next-Generation Sequencing (NGS) data analysis 15 Feb 2018 12:25:23 GMT
River stage one • 1 direct dependent • 1 total dependent Bio-Gonzales-0.078 Speedy functions to manipulate biological data 15 Feb 2018 08:49:11 GMT
River stage zero No dependents Bio-Roary-3.12.0 Create a pan genome 26 Jan 2018 09:42:28 GMT
River stage zero No dependents Bio-SearchIO-blastxml-1.70 A SearchIO implementation of NCBI Blast XML parsing. 04 Jan 2018 02:12:33 GMT
River stage zero No dependents Bio-Tradis-1.4.0 Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses. For more information on the TraDIS method, see http://genome.cshlp.org/content/19/12/2308 28 Nov 2017 15:12:07 GMT
River stage one • 1 direct dependent • 2 total dependents Bio-Tools-Run-Alignment-Clustalw-1.7.3 Object for the calculation of a multiple sequence alignment from a set of unaligned sequences or alignments using the Clustalw program 27 Sep 2017 17:30:25 GMT
River stage one • 1 direct dependent • 2 total dependents Bio-Tools-Run-Alignment-TCoffee-1.7.3 Object for the calculation of a multiple sequence alignment from a set of unaligned sequences or alignments using the TCoffee program 27 Sep 2017 17:23:48 GMT
River stage one • 6 direct dependents • 7 total dependents BioPerl-Run-1.007002 BioPerl-Run - wrapper toolkit 15 Sep 2017 04:00:53 GMT
River stage one • 1 direct dependent • 1 total dependent Bio-Tools-Phylo-PAML-1.7.2 Parses output from the PAML programs codeml, baseml, basemlg, codemlsites and yn00 11 Sep 2017 18:12:51 GMT
River stage zero No dependents Bio-BPWrapper-1.12 wrappers of popular BioPerl classes (`Bio::SeqIO`, `Bio::Seq`, `Bio::AlignIO`, `Bio::SimpleAlign 15 Aug 2017 20:30:37 GMT
River stage zero No dependents PrimerView-1.3.0.1 batch and single primer sequence maps 09 Jul 2017 17:48:17 GMT
River stage zero No dependents Bio-MLST-Check-2.1.1706216 Multilocus sequence type checking using blast 03 Mar 2017 16:23:59 GMT
River stage zero No dependents GBrowse-2.56 The GMOD Generic Genome Browser 15 Jan 2017 21:29:11 GMT
River stage one • 2 direct dependents • 2 total dependents Bio-Graphics-2.40 Generate GD images of Bio::Seq objects 16 Dec 2016 04:50:36 GMT
River stage zero No dependents AlignDB-Codon-1.1.1 translate sequences and calculate Dn/Ds 16 Dec 2016 00:10:26 GMT
River stage zero No dependents Bio-Coordinate-1.007001 Methods for dealing with genomic coordinates. 15 Dec 2016 05:03:14 GMT
River stage zero No dependents PrimerMap-1.3 Primer map from sequence and primer positions 06 Dec 2016 15:41:59 GMT
River stage zero No dependents Bio-EUtilities-1.75 Webagent which interacts with and retrieves data from NCBI's eUtils. 26 Sep 2016 04:08:04 GMT
River stage one • 1 direct dependent • 1 total dependent Bio-ASN1-EntrezGene-1.72 Regular expression-based Perl Parser for NCBI Entrez Gene. 02 Sep 2016 11:52:03 GMT
River stage zero No dependents Bio_AssemblyImprovement-1.160490 Improve an assembly by scaffolding, contig ordering and gap closing. 18 Feb 2016 10:10:42 GMT
River stage one • 2 direct dependents • 2 total dependents Bio-SamTools-1.43 Perl interface to SamTools library for DNA sequencing 12 Feb 2016 19:33:32 GMT
River stage zero No dependents Bio-Community-0.001008 Modules to represent and manipulate communities of biological organisms 08 Jan 2016 20:06:45 GMT
River stage one • 1 direct dependent • 1 total dependent Bio-GeneDesign-5.54 Functions for the design of synthetic genes 04 Dec 2015 20:13:38 GMT
River stage zero No dependents Bio-BioStudio-2.11 perl for the design of synthetic chromosomes 04 Dec 2015 18:59:24 GMT
River stage zero No dependents Bio-RetrieveAssemblies-1.1.5 Download assemblies from GenBank 23 Jul 2015 08:06:21 GMT
River stage zero No dependents Bio-DB-USeq-0.23 Read USeq archive database files 09 May 2015 04:15:41 GMT
River stage zero No dependents Bio-DB-Das-Chado-0.35a DAS-style access to a chado database 07 Apr 2015 23:02:17 GMT
River stage zero No dependents Bio-FeatureIO-1.6.905 Modules for reading, writing, and manipulating sequence features 05 Sep 2014 17:34:58 GMT
River stage zero No dependents Bio-AutomatedAnnotation-1.133090 Automated annotation of assemblies 05 Nov 2013 16:47:28 GMT
River stage zero No dependents Mecom-1.15 A Perl module for protein contact interfaces evolutive analysis 13 Jul 2013 18:55:01 GMT
River stage zero No dependents Bio-Biblio-1.70 Modules to access bibliographics repositories and handle citation files. 24 Mar 2013 00:19:52 GMT
River stage zero No dependents EBI-FGPT-FuzzyRecogniser_0.09 A set of modules that compares a supplied term to an ontology and suggests the best match based on some similarity metric (n-grams). 30 Jul 2012 09:16:51 GMT
River stage one • 3 direct dependents • 3 total dependents Bio-Chado-Schema-0.20000 A standard DBIx::Class layer for the Chado database schema. 06 Jul 2012 19:06:31 GMT
River stage one • 1 direct dependent • 1 total dependent Bio-BigFile-1.07 Manipulate Jim Kent's BigWig and BigBed index files for genomic features. 24 Feb 2012 17:20:46 GMT
River stage zero No dependents Webservice-InterMine-Bio-0.9900 Access data from InterMine queries in biological formats. 10 Jan 2012 19:14:07 GMT
River stage zero No dependents App-Mimosa-0.02 Miniature Model Organism Sequence Aligner 23 Nov 2011 21:43:31 GMT
River stage zero No dependents BioPerl-Network-1.006902 BioPerl-Network - package for biological networks 07 Nov 2011 16:27:40 GMT
River stage one • 1 direct dependent • 1 total dependent Bio-BLAST-0.4 low-level routines for working with BLAST tools and formats 12 Sep 2011 15:47:19 GMT
River stage one • 1 direct dependent • 1 total dependent Bio-GMOD-Blast-Graph-0.06 display a graphical summary of a BLAST report 10 Aug 2011 21:10:47 GMT
River stage zero No dependents Polloc-1.5.3b Polymorphic Loci analysis 29 Jun 2011 02:32:21 GMT
River stage zero No dependents BioPerl-DB-1.006900 BioPerl-DB - package for biological databases 15 Apr 2011 19:35:57 GMT
River stage one • 1 direct dependent • 1 total dependent Catalyst-View-Bio-SeqIO-0.02 use BioPerl's Bio::SeqIO as a Catalyst view 21 Feb 2011 06:44:36 GMT
River stage zero No dependents Bio-Tools-CodonOptTable-1.05 A more elaborative way to check the codons usage! 16 Sep 2010 01:15:35 GMT
River stage zero No dependents Bio-Das-1.17 Client-side library for Distributed Genome Annotation System 29 Jun 2010 19:43:55 GMT
River stage zero No dependents PerlIO-via-SeqIO-0.0322 PerlIO layer for biological sequence formats 05 Dec 2009 20:28:53 GMT
River stage zero No dependents Bio-Grep-v0.10.6 Perl extension for searching in DNA and Protein sequences 12 Nov 2009 20:01:33 GMT
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