This module allows you to read DNA position scoring matrices and/or their respective sequence matches from a file. There are two header methods, one belonging to Bio::Matrix::PSM::IO::driver and the other to Bio::Matrix::PSM::Psm. They provide genera...

Field.pm gives you access to the individual fields of a Grib file. Here is the code that attempts to decipher each of the sections associated with the format. All of the data is read into PDLs (one for each section) and it only deciphers those pdls o...

Provides a high level abstraction from creating output that is formatted in a structured way (like in tables). Currently, excel, csv, and html table output are supported. REQUIRES IO::Scalar Spreadsheet::WriteExcel Archive::Zip Text::CSV_XS EXPORT No...

This module provides a Perl interface that allows the reading of zlib files/buffers. For writing zip files/buffers, see the companion module IO::Compress::Zip. The primary purpose of this module is to provide *streaming* read access to zip files and ...

This module provides a Perl interface that allows writing compressed data to files or buffer as defined in RFC 1950. For reading RFC 1950 files/buffers, see the companion module IO::Uncompress::Inflate....

This module provides a Perl interface that allows the reading of files/buffers that conform to RFC 1952. For writing RFC 1952 files/buffers, see the companion module IO::Compress::Gzip....

This module provides convenience functions for using a lockfile to coordinate multi-process activities. While basically just a thin wrapper for Paranoid::IO functions it removes the small tedium of having to perform the multiple opens required to ens...

This module provides a Perl interface that allows the reading of files/buffers that conform to RFC 1950. For writing RFC 1950 files/buffers, see the companion module IO::Compress::Deflate....

Performs IO for catalogues that use the standard Tab Separated Table (TST) format. The TST format is commonly returned by astronomical catalogue servers that use the Astronomical Catalogue Library (ACL) format, although it is also perfectly reasonabl...

This module provides a Perl interface that allows writing compressed data to files or buffer as defined in RFC 1951. Note that RFC 1951 data is not a good choice of compression format to use in isolation, especially if you want to auto-detect it. For...

Parser for meme....

Parser for mast. This driver unlike meme or transfac for example is dedicated more to PSM sequence matches, than to PSM themselves....

This module provides a Perl interface that allows the reading of files/buffers that conform to RFC 1951. For writing RFC 1951 files/buffers, see the companion module IO::Compress::RawDeflate....

This module provides a Perl interface that allows the reading of files/buffers that have been compressed in a number of formats that use the zlib compression library. The formats supported are RFC 1950 RFC 1951 (optionally) gzip (RFC 1952) zip The mo...

This class provides read and write methods for catalogues in the Starlink FINDOFF input and output file format. The methods are not public and should, in general only be called from the "Astro::Catalog" "write_catalog" and "read_catalog" methods....

This Bio::Community::IO::Driver::biom driver reads and writes files in the BIOM format version 1.0 described at <http://biom-format.org/documentation/format_versions/biom-1.0.html>. Multiple communities and additional metadata can be recorded in a BI...

Each code reads a 100k-line file, line by line. Some lines (10% of them) contains "Fred" which will be substituted with "Barney". The lines are written back to another file. Packaging a benchmark script as a Bencher scenario makes it convenient to in...

MooseX::Storage::IO::AmazonDynamoDB is a Moose role that provides an io layer for MooseX::Storage to store/load your Moose objects to Amazon's DynamoDB NoSQL database service. You should understand the basics of Moose, MooseX::Storage, and DynamoDB <...