Bio::MAGE::AuditAndSecurity::Security - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "Security" class: Permission information for an object as to ownership, write and read permissions....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::BioAssay::PhysicalBioAssay - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "PhysicalBioAssay" class: A bioAssay created by the bioAssayCreation event (e.g. in gene expression analysis this event is represented by the hybridization event)....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::BioAssay::MeasuredBioAssay - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "MeasuredBioAssay" class: A measured bioAssay is the direct processing of information in a physical bioAssay by the featureExtraction event. Often uses images which are referenced through the physical bioAssay....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::ArrayDesign::ReporterGroup - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "ReporterGroup" class: Allows specification of the type of Reporter Design Element....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::BioAssay::ImageAcquisition - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "ImageAcquisition" class: The process by which an image is generated (typically scanning)....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::BioAssay::BioAssayCreation - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "BioAssayCreation" class: The process by which an array and one or more biomaterials are combined to create a bioAssayCreation....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::Description::OntologyEntry - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "OntologyEntry" class: A single entry from an ontology or a controlled vocabulary. For instance, category could be 'species name', value could be 'homo sapiens' and ontology would be taxonomy database, NCBI....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::BioAssayData::BioAssayData - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "BioAssayData" class: Represents the dataset created when the BioAssays are created. BioAssayData is the entry point to the values. Because the actual values are represented by a different object, BioDataValues,...

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::Description::DatabaseEntry - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "DatabaseEntry" class: A reference to a record in a database....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::BioAssayData::BioDataValues - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "BioDataValues" class: The actual values for the BioAssayCube. Bio::MAGE::BioAssayData::BioDataValues is an abstract base class and should not be directly instanciated. Instead it serves as an interface definiti...

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::BioAssayData::BioAssayDatum - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "BioAssayDatum" class: A single cell of the quantitation, bioAssay, designElement matrix....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::BioAssay::BioAssayTreatment - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "BioAssayTreatment" class: The event which records the process by which PhysicalBioAssays are processed (typically washing, blocking, etc...)....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::BioMaterial::LabeledExtract - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "LabeledExtract" class: LabeledExtracts are special BioSamples that have Compounds which are detectable (these are often fluorescent or reactive moieties)....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::ArrayDesign::CompositeGroup - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "CompositeGroup" class: Allows specification of the type of Composite Design Element....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::BioAssay::FeatureExtraction - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "FeatureExtraction" class: The process by which data is extracted from an image producing a measuredBioAssayData and a measuredBioAssay....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::BQS::BibliographicReference - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "BibliographicReference" class: Attributes for the most common criteria and association with OntologyEntry allows criteria to be specified for searching for a Bibliographic reference....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::BioAssayData::BioDataTuples - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "BioDataTuples" class: A relational, tuple representation of the data....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::BioAssayData::Transformation - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "Transformation" class: The process by which derivedBioAssays are created from measuredBioAssays and/or derivedBioAssays. It uses mappings to indicate the input and output dimensions....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::Measurement::TemperatureUnit - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "TemperatureUnit" class: Temperature...

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::DesignElement::DesignElement - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "DesignElement" class: An element of an array. This is generally of type feature but can be specified as reporters or compositeSequence for arrays that are abstracted from a physical array. Bio::MAGE::DesignElem...

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

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