Bio::MAGE::QuantitationType::PresentAbsent - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "PresentAbsent" class: Indicates relative presence or absence. From the enumeration AbsoluteCallTypeEnum {Present | Absent | Marginal | No call} or ComparisonCallTypeEnum {Increase I Marginal Increase | Decrease...

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::ArrayDesign::DesignElementGroup - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "DesignElementGroup" class: The DesignElementGroup holds information on either features, reporters, or compositeSequences, particularly that information that is common between all of the DesignElements contained...

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::BioAssayData::BioAssayDimension - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "BioAssayDimension" class: An ordered list of bioAssays....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::DesignElement::CompositePosition - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "CompositePosition" class: The location in the compositeSequence target's sequence to which a source compositeSequence maps. The association to MismatchInformation allows the specification, usually for control p...

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::DesignElement::CompositeSequence - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "CompositeSequence" class: A collection of Reporter or CompositeSequence Design Elements, annotated through the association to BioSequence....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::BioMaterial::CompoundMeasurement - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "CompoundMeasurement" class: A CompoundMeasurement is a pairing of a source Compound and an amount (Measurement) of that Compound....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::ArrayDesign::PhysicalArrayDesign - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "PhysicalArrayDesign" class: A design that is expected to be used to manufacture physical arrays....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::QuantitationType::MeasuredSignal - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "MeasuredSignal" class: Best measure from feature extraction as to the presence and intensity of the signal. Of type float....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::Array::ArrayManufactureDeviation - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "ArrayManufactureDeviation" class: Stores information of the potential difference between an array design and arrays that have been manufactured using that design (e.g. a tip failed to print several spots)....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::BioAssayData::QuantitationTypeMap - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "QuantitationTypeMap" class: A QuantitationTypeMap is the description of how source QuantitationTypes are mathematically transformed into a target QuantitationType....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::DesignElement::FeatureReporterMap - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "FeatureReporterMap" class: A FeatureReporterMap is the description of how source features are transformed into a target reporter. These would map replicate features for a reporter to the reporter....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::HigherLevelAnalysis::NodeContents - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "NodeContents" class: The contents of a node for any or all of the three Dimensions. If a node only contained genes just the DesignElementDimension would be defined....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::DesignElement::FeatureInformation - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "FeatureInformation" class: As part of the map information, allows the association of one or more differences in the BioMaterial on a feature from the BioMaterial of the Reporter. Useful for control purposes suc...

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::BioAssayData::DerivedBioAssayData - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "DerivedBioAssayData" class: The output of a transformation event....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::Array::ManufactureLIMSBiomaterial - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "ManufactureLIMSBiomaterial" class: Stores the location from which a biomaterial was obtained....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::DesignElement::MismatchInformation - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "MismatchInformation" class: Describes how a reporter varies from its ReporterCharacteristics sequence(s) or how a Feature varies from its Reporter sequence....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::BioAssayData::MeasuredBioAssayData - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "MeasuredBioAssayData" class: The data associated with the MeasuredBioAssay produced by FeatureExtraction....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::BioAssayData::DesignElementMapping - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "DesignElementMapping" class: Container of the mappings of the input DesignElement dimensions to the output DesignElement dimension....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::QuantitationType::QuantitationType - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "QuantitationType" class: A method for calculating a single datum of the matrix (e.g. raw intensity, background, error). Bio::MAGE::QuantitationType::QuantitationType is an abstract base class and should not be ...

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

Bio::MAGE::DesignElement::ReporterCompositeMap - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "ReporterCompositeMap" class: A ReporterCompositeMap is the description of how source Reporters are transformed into a target CompositeSequences. For instance, several reporters that tile across a section of a c...

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC

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