Bio::MUST::Apps::HmmCleaner - Main class for HmmCleaner River stage zero No dependents

ARNODF/Bio-MUST-Apps-HmmCleaner-0.180750 - 16 Mar 2018 13:11:05 UTC - Search in distribution

Bundle::Bio::Phylo::PhyLoTA - Modules used in supersmart-phylota project River stage zero No dependents

Modules used in supersmart-phylota project....

KARINILS/Bundle-Bio-Phylo-PhyLoTA-0.2 - 27 Sep 2012 13:18:41 UTC - Search in distribution

Bio::Homology::InterologWalk - Retrieve, prioritise and visualize putative Protein-Protein Interactions through interolog mapping River stage zero No dependents

A common activity in computational biology is to mine protein-protein interactions from publicly available databases to build *Protein-Protein Interaction* (PPI) datasets. In many instances, however, the number of experimentally obtained annotated PP...

GGALLONE/Bio-Homology-InterologWalk-0.58 - 01 Feb 2012 12:31:34 UTC - Search in distribution

Bio::Tools::Run::RemoteBlast - Object for remote execution of the NCBI Blast via HTTP River stage one • 1 direct dependent • 9 total dependents

Class for remote execution of the NCBI Blast via HTTP. For a description of the many CGI parameters see: https://www.ncbi.nlm.nih.gov/BLAST/Doc/urlapi.html Various additional options and input formats are available....

CJFIELDS/Bio-Tools-Run-RemoteBlast-1.7.3 - 25 Sep 2018 04:48:13 UTC - Search in distribution
  • bp_remote_blast.pl - script for submitting jobs to a remote blast server (ncbi blast queue at this time)

BioUtil - Bioinformatics Utilities! River stage zero No dependents

SHENWEI/BioUtil-2015.0728 - 28 Jul 2015 02:07:44 UTC - Search in distribution

GOBO::Bridges::Bio::TreeBridge River stage zero No dependents

CMUNGALL/GOBO-0.03 - 17 Aug 2009 18:03:10 UTC - Search in distribution

Bio::Tools::Alignment::Overview - just another represetation for biological sequence alignment. River stage zero No dependents

This module creates a simple and resumed representation of a biological sequence alignment. For now you can ajust the sequence color, with time new customizations will be implemented. If you find any problem please let me know....

LEPREVOST/Bio-Tools-Alignment-Overview-0.36 - 15 May 2014 01:02:43 UTC - Search in distribution

BioX::Map - map read to genome with bwa and soap River stage zero No dependents

This module aim to wrap bwa and soap, and statistic result...

PEKINGSAM/BioX-Map-0.0.12 - 03 Jun 2016 03:45:09 UTC - Search in distribution

BioX::Seq - a (very) basic biological sequence object River stage one • 1 direct dependent • 1 total dependent

"BioX::Seq" is a simple sequence class that can be used to represent biological sequences. It was designed as a compromise between using simple strings and hashes to hold sequences and using the rather bloated objects of Bioperl. Features (or, depend...

VOLKENING/BioX-Seq-0.008 - 21 Feb 2020 20:52:16 UTC - Search in distribution

Bio::MaxQuant::Evidence::Statistics - Additional statistics on your SILAC evidence River stage zero No dependents

JIMI/Bio-MaxQuant-Evidence-Statistics-0.01 - 06 Feb 2014 10:51:58 UTC - Search in distribution

lib/Bio/DB/NextProt.pm River stage zero No dependents

LEPREVOST/Bio-DB-NextProt-1.05 - 18 Oct 2014 19:21:50 UTC - Search in distribution

lib/Bio/KEGG/API.pm River stage zero No dependents

LEPREVOST/Bio-KEGG-API-0.02 - 18 Jan 2016 20:44:39 UTC - Search in distribution

lib/Bio/Oxbench/Util.pm River stage zero No dependents

WALSHTP/Bio-Oxbench-0.01 - 13 Apr 2011 14:08:23 UTC - Search in distribution


BioX::CLPM - Perl Tools for Mass Spec Peptide Matching River stage zero No dependents

CRABTREE/BioX-CLPM-0.01 - 02 Jul 2012 20:22:14 UTC - Search in distribution

Tie::File::AnyData::Bio::Fasta - Accessing fasta records in a file via a Perl array. River stage zero No dependents

"Tie::File::AnyData::Bio::Fasta" allows the management of fasta files via a Perl array through "Tie::File::AnyData", so read the documentation of this module for further details on its internals....

MOTIF/Tie-File-AnyData-Bio-Fasta-0.01 - 22 Mar 2008 17:37:35 UTC - Search in distribution

BioX::FedDB - Select/Resort a Federated BLAST Database with Catalyst and MySQL. River stage zero No dependents

This module has been developed to manage 100,000,000,000 BLAST survey results across a cluster....

ROGERHALL/BioX-FedDB-0.01 - 16 Jul 2009 00:47:19 UTC - Search in distribution

Bio::Graphics::Glyph::decorated_gene - A GFF3-compatible gene glyph with protein decorations River stage zero No dependents

This glyph has the same functionality as Bio::Graphics::Glyph::gene, but uses Bio::Graphics::Glyph::decorated_transcript instead of the Bio::Graphics::Glyph::processed_transcript to render transcripts, which allows sequence features to be highlighted...

CHRISFR/Bio-Graphics-Glyph-decorated_gene-0.03 - 29 Jun 2012 21:12:12 UTC - Search in distribution

BioX::Wrapper - Base class for BioX::Wrappers River stage one • 3 direct dependents • 7 total dependents

BioX::Wrapper is...

JILLROWE/BioX-Wrapper-1.5 - 18 Jun 2015 05:22:40 UTC - Search in distribution

BioX::Workflow - A very opinionated template based workflow writer. River stage one • 4 direct dependents • 4 total dependents

BioX::Workflow - A very opinionated template based workflow writer....

JILLROWE/BioX-Workflow-1.10 - 31 Aug 2016 02:58:43 UTC - Search in distribution

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