Text::Aligner River stage three • 3 direct dependents • 206 total dependents

Text::Aligner exports a single function, align(), which is used to justify strings to various alignment styles. The alignment specification is the first argument, followed by any number of scalars which are subject to alignment. The operation depends...

SHLOMIF/Text-Aligner-0.13 - 17 Apr 2016 09:41:51 GMT - Search in distribution

lib/App/Mimosa/Aligner.pm River stage zero No dependents

LETO/App-Mimosa-0.02 - 23 Nov 2011 21:43:31 GMT - Search in distribution
  • App::Mimosa - Miniature Model Organism Sequence Aligner

Bio::Graphics::Browser2::Plugin::Aligner - Dump multiple alignments from GBrowse River stage zero No dependents

The Aligner plugin dumps multiple nucleotide-to-nucleotide alignments in text form. For it to work properly, the genomic DNA must be loaded, as well as the DNAs for each of the aligned objects. In addition, the GFF load file must represent both the s...

LDS/GBrowse-2.56 - 15 Jan 2017 21:29:11 GMT - Search in distribution

lib/Perl/Tidy/VerticalAligner.pm River stage three • 72 direct dependents • 640 total dependents

SHANCOCK/Perl-Tidy-20190915 - 14 Sep 2019 23:41:55 GMT - Search in distribution

Bio::MUST::Apps::SlaveAligner::Local - Internal class for slave-aligner River stage zero No dependents

DBAURAIN/Bio-MUST-Apps-FortyTwo-0.190820 - 23 Mar 2019 17:23:14 GMT - Search in distribution

nat-sentalign - C sentence aligner. River stage zero No dependents

You should use nat-sentence-align...

AMBS/Lingua-NATools-v0.7.10 - 31 Oct 2015 16:52:31 GMT - Search in distribution

App::Egaz - Backend of Easy Genome Aligner River stage zero No dependents

App::Egaz is the backend of Easy Genome Aligner. Caution: "egaz lpcnam" implement UCSC's chain-net pipeline, but some parts, e.g. "axtChain" don't work correctly under macOS. Use "egaz lastz"'s build in chaining mechanism ("C=2") instead....

WANGQ/App-Egaz-0.2.4 - 03 Sep 2019 17:50:15 GMT - Search in distribution

bam2wig.pl - A program to convert Bam alignments into a wig representation file. River stage zero No dependents

This program will enumerate aligned sequence tags and generate a wig, or optionally BigWig, file. Alignments may be counted and recorded in several different ways. Strict enumeration may be performed and recorded at either the alignment's start or mi...

TJPARNELL/Bio-ToolBox-1.66 - 04 Jun 2019 03:27:23 GMT - Search in distribution

uplug - the main startup script for the Uplug toolbox River stage two • 10 direct dependents • 10 total dependents

The basic use of this startup script is to load a Uplug module, to parse its configuration and to run it using the command-line arguments give. Uplug modules may consist of complex processing pipelines and loops and Uplug tries to build system calls ...

TIEDEMANN/uplug-main-0.3.8 - 16 Mar 2013 20:19:32 GMT - Search in distribution

coocfreq - count co-occurrence frequencies for arbitrary features of nodes in a parallel treebank River stage zero No dependents

This script counts frequencies and co-occurrence frequencies of source and target language features. It runs through the sentence aligned treebank and combines all node pairs. Note that co-occurrence frequencies in a sentence are " max( srcfreq(srcfe...

TIEDEMANN/Lingua-Align-0.04 - 10 Dec 2012 18:31:24 GMT - Search in distribution

subalign - script for aligning the OpenSubtitlesXXXX corpora River stage zero No dependents

subalign looks at pairs of movie subtitle files in the OpenSubtitle corpora and tries to find the best pair that aligns with the least empty translation units among all alternative subtitle files. It uses a score that combines the proportion of non-e...

TIEDEMANN/Text-SRT-Align-0.2 - 15 Sep 2018 12:40:54 GMT - Search in distribution
  • srtalign - align movie subtitles based on time overlaps

Text::Autoformat - Automatic text wrapping and reformatting River stage two • 21 direct dependents • 72 total dependents

Paragraphs The fundamental task of the "autoformat" subroutine is to identify and rearrange independent paragraphs in a text. Paragraphs typically consist of a series of lines containing at least one non-whitespace character, followed by one or more ...

NEILB/Text-Autoformat-1.75 - 13 Aug 2019 10:43:04 GMT - Search in distribution

tmxsplit - Splits a TMX file several files, one for each language River stage one • 3 direct dependents • 5 total dependents

splits a TMX file in several files (one per language) and puts a tag "tu id=..." in each translation unit. The names for output files is based on the first tmx file supplied....

AMBS/XML-TMX-0.36 - 07 Sep 2017 10:36:49 GMT - Search in distribution

Text::Table - Organize Data in Tables River stage three • 44 direct dependents • 196 total dependents

Organization of data in table form is a time-honored and useful method of data representation. While columns of data are trivially generated by computer through formatted output, even simple tasks like keeping titles aligned with the data columns are...

SHLOMIF/Text-Table-1.133 - 04 Aug 2017 17:54:24 GMT - Search in distribution

Text::LookUpTable - Perl5 module for text based look up table operations River stage one • 1 direct dependent • 1 total dependent

Text::LookUpTable provides operations for creating, storing, displaying, plotting, loading, and querying a *look up table* structure. The format of the stored structure is designed to be visually easy to understand so that it can be easily edited usi...

JERI/Text-LookUpTable-0.05 - 05 Aug 2010 00:33:55 GMT - Search in distribution

CLIPSeqTools::Tutorial::Details - A detailed description of CLIPSeqTools River stage zero No dependents

MNSMAR/CLIPSeqTools-0.1.8 - 17 May 2018 14:12:14 GMT - Search in distribution

Bio::AlignIO::xmfa - XMFA MSA Sequence input/output stream River stage two • 71 direct dependents • 74 total dependents

This object can transform Bio::SimpleAlign objects from XMFA flat file databases. For more information, see: http://asap.ahabs.wisc.edu/mauve-aligner/mauve-user-guide/mauve-output-file-formats.html This module is based on the AlignIO::fasta parser wr...

CDRAUG/BioPerl-1.7.6 - 28 Aug 2019 11:42:06 GMT - Search in distribution

FAST::Bio::AlignIO::xmfa - XMFA MSA Sequence input/output stream River stage zero No dependents

This object can transform FAST::Bio::SimpleAlign objects from XMFA flat file databases. For more information, see: http://asap.ahabs.wisc.edu/mauve-aligner/mauve-user-guide/mauve-output-file-formats.html This module is based on the AlignIO::fasta par...

DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 GMT - Search in distribution

Text::TEI::Collate - a collation program for variant manuscript texts River stage zero No dependents

Text::TEI::Collate is a collation program for multiple (transcribed) manuscript copies of a known text. It is an object-oriented interface, mostly for the convenience of the author and for the ability to have global settings. The object is the alignm...

AURUM/Text-TEI-Collate-2.1 - 20 Oct 2011 00:42:43 GMT - Search in distribution

GenOOx::Data::File::SAMbwa - GenOO framework extension to read SAM files created by the BWA aligner River stage one • 1 direct dependent • 1 total dependent

The GenOO framework SAM parser avoids code that is unique to specific programs and makes no assumptions for the optional fields in a SAM file. This module is a plugin for the GenOO framework and provides the functionality for reading SAM files genera...

MNSMAR/GenOOx-Data-File-SAMbwa-0.0.5 - 19 Jun 2019 22:14:21 GMT - Search in distribution

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