Bio::Location::Fuzzy - Implementation of a Location on a Sequence which has unclear start and/or end locations River stage two • 60 direct dependents • 65 total dependents

This module contains the necessary methods for representing a Fuzzy Location, one that does not have clear start and/or end points. This will initially serve to handle features from Genbank/EMBL feature tables that are written as 1^100 meaning betwee...

CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution

FAST::Bio::Location::Split - Implementation of a Location on a Sequence which has multiple locations (start/end points) River stage zero No dependents

This implementation handles locations which span more than one start/end location, or and/or lie on different sequences, and can work with split locations that depend on the specific order of the sublocations ('join') or don't have a specific order b...

DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution

Bio::Palantir::Parser::Location - BiosynML DTD-derived internal class River stage zero No dependents

# TODO...

LMEUNIER/Bio-Palantir-0.211420 - 22 May 2021 20:37:07 UTC - Search in distribution

Bio::DB::BioSQL::LocationAdaptor - DESCRIPTION of Object River stage zero No dependents

Describe the object here...

CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC - Search in distribution

Bio::MAGE::DesignElement::FeatureLocation - Class for the MAGE-OM API River stage zero No dependents

From the MAGE-OM documentation for the "FeatureLocation" class: Specifies where a feature is located relative to a grid....

JASONS/Bio-MAGE-20030502.3 - 14 May 2007 10:56:09 UTC - Search in distribution

perlop - Perl operators and precedence River stage five • 10862 direct dependents • 31686 total dependents

In Perl, the operator determines what operation is performed, independent of the type of the operands. For example "$x + $y" is always a numeric addition, and if $x or $y do not contain numbers, an attempt is made to convert them to numbers first. Th...

XSAWYERX/perl-5.32.0 - 20 Jun 2020 20:38:54 UTC - Search in distribution
  • perlop - Perl operators and precedence
  • perlop - Perl operators and precedence

Data::Edit::Xml - Edit data held in the XML format. River stage one • 5 direct dependents • 6 total dependents

Edit data held in the XML format. Version 20201031. The following sections describe the methods in each functional area of this module. For an alphabetic listing of all methods by name see Index....

PRBRENAN/Data-Edit-Xml-20201031 - 31 Oct 2020 23:42:40 UTC - Search in distribution

data2wig.pl - A program to convert a generic data file into a wig file. River stage zero No dependents

This program will convert any tab-delimited data text file into a wiggle formatted text file. This requires that the file contains not only the scores bu also chromosomal coordinates, i.e. chromosome, start, and (optionally) stop. The program should ...

TJPARNELL/Bio-ToolBox-1.68 - 24 Jan 2021 19:38:27 UTC - Search in distribution

WWW::Myspace - Access MySpace.com profile information from Perl River stage zero No dependents

STEVENC/WWW-Myspace-0.92 - 29 Jan 2009 13:45:39 UTC - Search in distribution

cipresrun - command line interface to the CIPRES analysis portal River stage zero No dependents

RVOSA/Bio-Phylo-CIPRES-v0.2.1 - 17 Apr 2020 22:55:30 UTC - Search in distribution

bp_biblio - bioperl client for accessing and querying a bibliographic repository River stage zero No dependents

A client showing how to use Bio::Biblio module, a module for accessing and querying a bibliographic repository. It also shows how to use modules Bio::Biblio::IO::medlinexml Bio::Biblio::IO::medline2ref which converts XML MEDLINE citations into a simp...

CDRAUG/Bio-Biblio-1.70 - 24 Mar 2013 00:19:52 UTC - Search in distribution

Data::SeaBASS - Object-oriented interface for reading/writing SeaBASS files River stage zero No dependents

"Data::SeaBASS" provides an easy to use, object-oriented interface for reading, writing, and modifying SeaBASS data files. What is SeaBASS? SeaWiFS <http://oceancolor.gsfc.nasa.gov> Bio-optical Archive and Storage System housed at Goddard Space Fligh...

JLEFLER/Data-SeaBASS-0.192600 - 17 Sep 2019 16:38:49 UTC - Search in distribution

Boulder::Genbank - Fetch Genbank data records as parsed Boulder Stones River stage zero No dependents

Boulder::Genbank provides retrieval and parsing services for NCBI Genbank-format records. It returns Genbank entries in Stone format, allowing easy access to the various fields and values. Boulder::Genbank is a descendent of Boulder::Stream, and prov...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 UTC - Search in distribution

WWW::Autosite - support subroutines for autosite handlers, router, and misc cgi scripts River stage zero No dependents

Support subroutines for building cgi with HTML::Template....

LEOCHARRE/WWW-Autosite-1.08 - 27 Mar 2007 22:45:10 UTC - Search in distribution

megatree-pruner - Given a list of taxa, returns subtree from a database River stage zero No dependents

This program produces the subtree of the set of taxa provided as input from a previously produced database. As such, the functionality is roughly similar to extracting the 'common tree' from the NCBI taxonomy, which is a common operation in phylogeno...

RVOSA/Bio-Phylo-Forest-DBTree-v0.1.2 - 24 Oct 2017 14:06:26 UTC - Search in distribution

WWW::Formspring - Perl interface for formspring.me River stage zero No dependents

This is a Perl interface for the very beta formspring.me API. This module is subject to breakage as they play with the final spec of their API. Most methods share names with the paths of the API counterparts, making the formspring API documentation o...

WORR/WWW-Formspring-0.03 - 06 Oct 2010 15:14:01 UTC - Search in distribution

Bio::Trace::ABIF - Perl extension for reading and parsing ABIF (Applied Biosystems, Inc. Format) files River stage one • 1 direct dependent • 1 total dependent

VITA/Bio-Trace-ABIF-1.06 - 02 Nov 2016 11:16:32 UTC - Search in distribution

pod::INSTALL River stage zero No dependents

LDS/GBrowse-2.56 - 15 Jan 2017 21:29:11 UTC - Search in distribution

Bio::KBase::CDMI::Client River stage zero No dependents

RDO/Bio-KBase-0.06 - 15 Aug 2012 23:56:34 UTC - Search in distribution

lib/CaCORE/CaBIO.pm River stage zero No dependents

NCICB/CaCORE-3.2.1_r1 - 19 Mar 2007 19:18:33 UTC - Search in distribution
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