6 results (0.266 seconds)
Chemistry::File::PDB - Protein Data Bank file format reader/writer ++

This module reads and writes PDB files. The PDB file format is commonly used to describe proteins, particularly those stored in the Protein Data Bank (<http://www.rcsb.org/pdb/>). The current version of this module only reads the following record typ...

ITUB/Chemistry-File-PDB-0.23 - 10 May 2009 21:58:55 GMT - Search in distribution

Chemistry::File::VRML - Generate VRML models for molecules ++

This module generates a VRML (Virtual Reality Modeling Language) representation of a molecule, which can then be visualized with any VRML viewer. This is a PerlMol file I/O plugin, and registers the 'vrml' format with Chemistry::Mol. Note however tha...

ITUB/Chemistry-File-VRML-0.10 - 16 May 2005 21:17:49 GMT - Search in distribution

PerlMol - Perl modules for molecular chemistry 1 ++

PerlMol is a collection of Perl modules for chemoinformatics and computational chemistry with the philosophy that "simple things should be simple". It should be possible to write one-liners that use this toolkit to do meaningful "molecular munging". ...

ITUB/PerlMol-0.3500 - 24 May 2005 23:19:23 GMT - Search in distribution

mok - an awk for molecules ++

The purpose of mok is to read all the molecules found in the files that are given in the command line, and for each molecule execute the CODE that is given. The CODE is given in Perl and it has at its disposal all of the methods of the PerlMol toolki...

ITUB/Chemistry-Mok-0.25 - 16 May 2005 21:55:57 GMT - Search in distribution

Chemistry::File - Molecule file I/O base class ++

The main use of this module is as a base class for other molecule file I/O modules (for example, Chemistry::File::PDB). Such modules should override and extend the Chemistry::File methods as needed. You only need to care about the methods here if if ...

ITUB/Chemistry-Mol-0.37 - 10 May 2009 19:40:56 GMT - Search in distribution

Chemistry::MidasPattern - Select atoms in macromolecules ++

This module partially implements a pattern matching engine for selecting atoms in macromolecules by using Midas/Chimera patterns. See <http://www.cmpharm.ucsf.edu/~troyer/troff2html/midas/Midas-uh-3.html#sh-2 .1> for a detailed description of this la...

ITUB/Chemistry-MidasPattern-0.11 - 16 May 2005 23:06:55 GMT - Search in distribution




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