GOBO::Gene River stage zero No dependents

An GOBO::Node that corresponds to a specific SO:gene In GO, genes are the subject of GOBO::Annotation statements TBD This should really be in bioperl. Modeled as nodes as they can be elements in a graph. cf Chado...

CMUNGALL/GOBO-0.03 - 17 Aug 2009 18:03:10 UTC - Search in distribution

GenOO::Gene - Gene object River stage one • 3 direct dependents • 3 total dependents

GenOO::Gene describes a gene. A gene is defined as a genomic region (it has the strand, chromosome, start and stop attributes required by GenOO::GenomicRegion) as well as collection of GenOO::Transcript objects. The genomic location attributes can be...

MNSMAR/GenOO-1.5.2 - 06 May 2020 21:51:14 UTC - Search in distribution

lib/Peptide/Gene.pm River stage zero No dependents

SHTATLAND/Peptide-Pubmed-1.02 - 26 Jul 2007 04:55:44 UTC - Search in distribution
  • Peptide::Pubmed - extract peptide sequences from MEDLINE article abstracts.

AI::Gene::Simple River stage zero No dependents

This is a class which provides generic methods for the creation and mutation of genetic sequences. Various mutations are provided but the resulting mutations are not checked for a correct syntax. These classes are suitable for genes where it is only ...

AJGOUGH/AI-Gene-Sequence-0.22 - 10 May 2011 03:41:28 UTC - Search in distribution

Ace::Sequence::Gene - Simple "Gene" Object River stage one • 1 direct dependent • 1 total dependent

Ace::Sequence::Gene is a subclass of Ace::Sequence::Feature. It inherits all the methods of Ace::Sequence::Feature, but adds the ability to retrieve the annotated introns and exons of the gene....

LDS/AcePerl-1.92 - 11 Nov 2008 16:47:31 UTC - Search in distribution

AI::FANN::Evolving::Gene - gene that codes for an artificial neural network (ANN) River stage zero No dependents

RVOSA/AI-FANN-Evolving-0.4 - 04 Jun 2014 22:42:31 UTC - Search in distribution
  • aivolver - Evolves optimal artificial neural networks

SemanticWeb::Schema::Gene - A discrete unit of inheritance which affects one or more biological traits (Source: [https://en River stage one • 1 direct dependent • 1 total dependent

A discrete unit of inheritance which affects one or more biological traits (Source: [https://en.wikipedia.org/wiki/Gene](https://en.wikipedia.org/wiki/Gene) ). Examples include FOXP2 (Forkhead box protein P2), SCARNA21 (small Cajal body-specific RNA ...

RRWO/SemanticWeb-Schema-v13.0.0 - 07 Jul 2021 16:13:51 UTC - Search in distribution

Bio::Graphics::Glyph::gene - A GFF3-compatible gene glyph River stage one • 2 direct dependents • 2 total dependents

This glyph is used for drawing genes that may have alternatively-spliced transcripts. The various isoforms are stacked on top of each other and given a single label and description that apply to the entire stack. Each individual transcript's name is ...

CJFIELDS/Bio-Graphics-2.40 - 16 Dec 2016 04:50:36 UTC - Search in distribution

Bio::SeqFeature::Gene::UTR - A feature representing an untranslated region that is part of a transcriptional unit River stage two • 60 direct dependents • 65 total dependents

A UTR is a Bio::SeqFeature::Gene::ExonI compliant object that is non-coding, and can be either 5' or 3' in a transcript....

CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution

Bio::Palantir::Parser::Gene - BiosynML DTD-derived internal class River stage zero No dependents

# TODO...

LMEUNIER/Bio-Palantir-0.211420 - 22 May 2021 20:37:07 UTC - Search in distribution

Algorithm::Genetic::Diploid::Gene - a gene with an expressible function River stage one • 1 direct dependent • 1 total dependent

RVOSA/Algorithm-Genetic-Diploid-0.3 - 04 Jun 2014 22:41:04 UTC - Search in distribution

Bio::DB::GFF::Aggregator::gene - Sequence Ontology Geene River stage one • 2 direct dependents • 2 total dependents

Bio::DB::GFF::Aggregator::gene is identical to so_transcript, but is used in those cases where you would like the name of the aggregated feature to be "gene" rather than "processed_transcript". It aggregates raw "exon," "CDS", "five_prime_UTR", "thre...

CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC - Search in distribution

FAST::Bio::SeqFeature::Gene::UTR - A feature representing an untranslated region that is part of a transcriptional unit River stage zero No dependents

A UTR is a FAST::Bio::SeqFeature::Gene::ExonI compliant object that is non-coding, and can be either 5' or 3' in a transcript....

DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution

Microarray::Explorer - class for viewing clustered expression data over the web River stage zero No dependents

SHERLOCK/Microarray-GeneXplorer-0.11 - 15 Jul 2004 23:59:11 UTC - Search in distribution

TAIR::GeneDescriptions - Automatically download gene descriptions using locus identifiers (AGI codes) or gene names. River stage zero No dependents

HSUREN/TAIR-GeneDescriptions-1.00 - 04 Apr 2011 13:09:01 UTC - Search in distribution

GO::AnnotatedGene River stage zero No dependents

The GO::AnnotatedGene package allows creation of objects that contains the details of a gene as determined from a gene_associations file. Typically these objects will contain the following information: Column Cardinality Contents ------ ----------- -...

SHERLOCK/GO-TermFinder-0.86 - 19 Nov 2009 17:39:14 UTC - Search in distribution

Bio::ASN1::Sequence - Regular expression-based Perl Parser for ASN.1-formatted NCBI Sequences. River stage two • 2 direct dependents • 12 total dependents

Bio::ASN1::Sequence is a regular expression-based Perl Parser for ASN.1-formatted NCBI sequences. It parses an ASN.1-formatted sequence record and returns a data structure that contains all data items from the sequence record. The parser will report ...

CJFIELDS/Bio-ASN1-EntrezGene-1.73 - 25 Sep 2018 02:32:11 UTC - Search in distribution

Bio::DB::EntrezGene - Database object interface to Entrez Gene River stage two • 3 direct dependents • 10 total dependents

Allows the dynamic retrieval of Sequence objects from the Entrez Gene database at NCBI, via an Entrez query using Gene ids. This module requires the CPAN Bio::ASN1 module. WARNING: Please do NOT spam the Entrez web server with multiple requests. NCBI...

CJFIELDS/Bio-DB-NCBIHelper-1.7.7 - 30 Jun 2021 13:56:04 UTC - Search in distribution

Bio::Cluster::UniGene - UniGene object River stage two • 1 direct dependent • 13 total dependents

This UniGene object implements the Bio::Cluster::UniGeneI interface for the representation if UniGene clusters in Bioperl. It is returned by the Bio::ClusterIO parser for unigene format and contains all the data associated with one UniGene record. Th...

CJFIELDS/Bio-Cluster-1.7.3 - 01 Oct 2018 04:35:53 UTC - Search in distribution
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