Mecom - A Perl module for protein contact interfaces evolutive analysis

This module integrates a workflow aimed to address the evolvability of the contact interfaces within a protein complex. The method "Mecom->run" launchs the whole analysis. Also, such workflow is divided into the following steps: Step 1, Structural an...

HVALVERDE/Mecom-1.15 - 13 Jul 2013 18:55:01 GMT - Search in distribution

Bio::SeqIO - Handler for SeqIO Formats

Bio::SeqIO is a handler module for the formats in the SeqIO set (eg, Bio::SeqIO::fasta). It is the officially sanctioned way of getting at the format objects, which most people should use. The Bio::SeqIO system can be thought of like biological file ...

CJFIELDS/BioPerl-1.007000 - 25 Sep 2016 05:17:51 GMT - Search in distribution

FAST::Bio::SeqIO - Handler for SeqIO Formats

FAST::Bio::SeqIO is a handler module for the formats in the SeqIO set (eg, FAST::Bio::SeqIO::fasta). It is the officially sanctioned way of getting at the format objects, which most people should use. The FAST::Bio::SeqIO system can be thought of lik...

DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 GMT - Search in distribution

Bio::Trace::ABIF - Perl extension for reading and parsing ABIF (Applied Biosystems, Inc. Format) files

VITA/Bio-Trace-ABIF-1.05 - 25 Feb 2010 13:14:10 GMT - Search in distribution

Bio::Align::Subset - A BioPerl module to generate new alignments as subset from larger alignments

Given an array of codon positions and an alignment, the function Bio::Align::Subset->build_subset returns a new alignment with the codons at those positions from the original alignment....

HVALVERDE/Bio-Align-Subset-1.27 - 08 May 2013 17:33:42 GMT - Search in distribution

get_binned_data.pl - A program to collect data in bins across a list of features.

This program will collect data across a gene or feature body into numerous percentile bins. It is used to determine if there is a spatial distribution preference for the dataset over gene bodies. The number of bins may be specified as a command argum...

TJPARNELL/Bio-ToolBox-1.41 - 13 Aug 2016 03:09:57 GMT - Search in distribution