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BioPerl - Perl Modules for Biology 11 ++

BioPerl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects. These objects not only do what they are advertised to do in the documen...

CJFIELDS/BioPerl-1.6.924 - 10 Jul 2014 20:22:23 GMT - Search in distribution

Mecom - A Perl module for protein contact interfaces evolutive analysis ++

This module integrates a workflow aimed to address the evolvability of the contact interfaces within a protein complex. The method "Mecom->run" launchs the whole analysis. Also, such workflow is divided into the following steps: Step 1, Structural an...

HVALVERDE/Mecom-1.15 - 13 Jul 2013 18:55:01 GMT - Search in distribution

average_gene.pl - A program to generate class average summaries for a list of features. ++

This program will collect data across a gene or feature body into numerous percentile bins. It is used to determine if there is a spatial distribution preference for the dataset over gene bodies. The number of bins may be specified as a command argum...

TJPARNELL/Bio-ToolBox-1.19 - 30 May 2014 03:02:05 GMT - Search in distribution

Bio::Trace::ABIF - Perl extension for reading and parsing ABIF (Applied Biosystems, Inc. Format) files ++
VITA/Bio-Trace-ABIF-1.05 - 25 Feb 2010 13:14:10 GMT - Search in distribution

Bio::Align::Subset - A BioPerl module to generate new alignments as subset from larger alignments ++

Given an array of codon positions and an alignment, the function Bio::Align::Subset->build_subset returns a new alignment with the codons at those positions from the original alignment. CONSTRUCTOR Bio::Align::Subset->new() $Obj = Bio::Align::Subset-...

HVALVERDE/Bio-Align-Subset-1.27 - 08 May 2013 17:33:42 GMT - Search in distribution

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