Stone - In-memory storage for hierarchical tag/value data structures River stage zero No dependents

A Stone consists of a series of tag/value pairs. Any given tag may be single-valued or multivalued. A value can be another Stone, allowing nested components. A big Stone can be made up of a lot of little stones (pebbles?). You can obtain a Stone from...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder - An API for hierarchical tag/value structures River stage zero No dependents

Boulder IO Boulder IO is a simple TAG=VALUE data format designed for sharing data between programs connected via a pipe. It is also simple enough to use as a common data exchange format between databases, Web pages, and other data representations. Th...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::XML - XML format input/output for Boulder streams River stage zero No dependents

Boulder::XML generates BoulderIO streams from XML files and/or streams. It is also able to output Boulder Stones in XML format. Its semantics are similar to those of Boulder::Stream, except that there is never any pass-through behavior. Because XML w...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::Omim - Fetch Omim data records as parsed Boulder Stones River stage zero No dependents

Boulder::Omim provides retrieval and parsing services for OMIM records Boulder::Omim provides retrieval and parsing services for NCBI Omim records. It returns Omim entries in Stone format, allowing easy access to the various fields and values. Boulde...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Stone::Cursor - Traverse tags and values of a Stone River stage zero No dependents

Boulder::Cursor is a utility class that allows you to create one or more iterators across a Stone object. This is used for traversing large Stone objects in order to identify or modify portions of the record. CLASS METHODS Boulder::Cursor->new($stone...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::Blast - Parse and read BLAST files River stage zero No dependents

The *Boulder::Blast* class parses the output of the Washington University (WU) or National Cenber for Biotechnology Information (NCBI) series of BLAST programs and turns them into *Stone* records. You may then use the standard Stone access methods to...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::Store - Simple persistent storage for Stone tag/value objects River stage zero No dependents

Boulder::Store provides persistent storage for Boulder objects using a simple DB_File implementation. To use it, you need to have Berkeley db installed (also known as libdb), and the Perl DB_File module. See the DB_File package for more details on ob...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::Stream - Read and write tag/value data from an input stream River stage zero No dependents

Boulder::Stream provides stream-oriented access to Boulder IO hierarchical tag/value data. It can be used in a magic tied filehandle mode, as shown in the synopsis, or in object-oriented mode. Using tied filehandles, Stone objects are read from input...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::String - Read and write tag/value data from a string. River stage zero No dependents

Boulder::String provides access to Boulder IO hierarchical tag/value data. Stone objects printed to the tied string are appended to the string in Boulder format....

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::Unigene - Fetch Unigene data records as parsed Boulder Stones River stage zero No dependents

Boulder::Unigene provides retrieval and parsing services for UNIGENE records Boulder::Unigene provides retrieval and parsing services for NCBI Unigene records. It returns Unigene entries in Stone format, allowing easy access to the various fields and...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::Genbank - Fetch Genbank data records as parsed Boulder Stones River stage zero No dependents

Boulder::Genbank provides retrieval and parsing services for NCBI Genbank-format records. It returns Genbank entries in Stone format, allowing easy access to the various fields and values. Boulder::Genbank is a descendent of Boulder::Stream, and prov...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::Medline - Fetch Medline data records as parsed Boulder Stones River stage zero No dependents

Boulder::Medline provides retrieval and parsing services for Medline records Boulder::Medline provides retrieval and parsing services for NCBI Medline records. It returns Medline entries in Stone format, allowing easy access to the various fields and...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::Blast::WU - Parse and read WU-BLAST files River stage zero No dependents

Specialized parser for WUBLAST format BLAST output. Loaded automatically by Boulder::Blast....

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::Swissprot - Fetch SwissProt data records as parsed Boulder Stones River stage zero No dependents

== missing ==...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Stone::GB_Sequence - Specialized Access to GenBank Records River stage zero No dependents

Stone::GB_Sequence provides several specialized access methods to the various fields in a GenBank flat file record. You can return the sequence as a Bio::Seq object, or query the sequence for features that match positional or descriptional criteria t...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::LocusLink - Fetch LocusLink data records as parsed Boulder Stones River stage zero No dependents

Boulder::LocusLink provides retrieval and parsing services for LocusLink records Boulder::LocusLink provides retrieval and parsing services for NCBI LocusLink records. It returns Unigene entries in Stone format, allowing easy access to the various fi...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::Blast::NCBI - Parse and read NCBI BLAST files River stage zero No dependents

Specialized parser for NCBI format BLAST output. Loaded automatically by Boulder::Blast....

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder/Labbase.pm River stage zero No dependents

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

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