Bio::GMOD - Unified API for Model Organism Databases River stage zero No dependents

Bio::GMOD is a unified API for accessing various Model Organism Databases. It is a part of the Generic Model Organism Database project, as well as distributed on CPAN. MODs are highly curated resources of biological data. Although they typically inco...

TWH/Bio-GMOD-0.028 - 07 Jul 2005 18:24:47 UTC

Bio::GMOD::Query - Execute generic queries for different MODs River stage zero No dependents

Bio::GMOD::Query is a generic place holder describing methods that subclasses should implement. MODs that wish to support Bio::GMOD::Query should subclass this module. Each general data type that can be fetched should also be a method name. Bio::GMOD...

TWH/Bio-GMOD-0.028 - 07 Jul 2005 18:24:47 UTC

Bio::GMOD::Adaptor - Generic factory for Bio::GMOD::Adaptor::* objects River stage zero No dependents

Bio::GMOD::Adaptor acts as a generic factor for Bio::GMOD::Adaptor::* objects. You will not interact directly with Bio::GMOD::Adaptor objects. Bio::GMOD::Adaptor primarily serves to read in default values for common variables. These can be provided b...

TWH/Bio-GMOD-0.028 - 07 Jul 2005 18:24:47 UTC

Bio-GMOD-introduction River stage zero No dependents

TWH/Bio-GMOD-0.028 - 07 Jul 2005 18:24:47 UTC

Bio::GMOD::Adaptor::SGD - Defaults for programmatically interacting with SGD River stage zero No dependents

STUB DOCUMENTATION Bio::GMOD::Adaptor::SGD objects are created internally by the new() method provided by Bio::GMOD::Adaptor. Adaptor::* objects contain appropriate defaults for interacting programmatically with the GMOD of choice. Defaults are read ...

TWH/Bio-GMOD-0.028 - 07 Jul 2005 18:24:47 UTC

Bio::GMOD::StandardURLs - Discover and fetch Standard URLs from MODs River stage zero No dependents

TWH/Bio-GMOD-0.028 - 07 Jul 2005 18:24:47 UTC

Bio::GMOD::Util::Mirror - File and directory mirroring River stage zero No dependents

Bio::GMOD::Util::Mirror is used to fetch files and directories in order to keep a MOD installation up-to-date....

TWH/Bio-GMOD-0.028 - 07 Jul 2005 18:24:47 UTC

Bio::GMOD::Util::Status - Message processing for Bio::GMOD River stage zero No dependents

Bio::GMOD::Util::Status provides a variety of methods for processing messages and handling errors throughout Bio::GMOD....

TWH/Bio-GMOD-0.028 - 07 Jul 2005 18:24:47 UTC

Bio::GMOD::Admin::Update - Generics methods for updating a Bio::GMOD installation River stage zero No dependents

Bio::GMOD::Admin::Update contains subroutines that simplify the maintenance of a Bio::GMOD installation....

TWH/Bio-GMOD-0.028 - 07 Jul 2005 18:24:47 UTC

Bio::GMOD::Admin::Archive - Create archives of Wormbase releases River stage zero No dependents

TWH/Bio-GMOD-0.028 - 07 Jul 2005 18:24:47 UTC

Bio::GMOD::Admin::Monitor - Monitor the status of an installed MOD River stage zero No dependents

You will not normally work with Bio::GMOD::Admin::Monitor objects directly. This parent class is intended to be subclassed by MOD developers who wish to provide internal monitoring capabilities for administrators....

TWH/Bio-GMOD-0.028 - 07 Jul 2005 18:24:47 UTC

Bio::GMOD::Query::FlyBase - Defaults for programmatically interacting with Wormbase River stage zero No dependents

Bio::GMOD::Adaptor::WormBase objects are created internally by the new() method provided by Bio::GMOD::Adaptor. Adaptor::* objects contain appropriate defaults for interacting programmatically with the GMOD of choice. Defaults are read dynamically fr...

TWH/Bio-GMOD-0.028 - 07 Jul 2005 18:24:47 UTC

Bio::GMOD::Admin::Archive - archiving of WormBase releases River stage zero No dependents

TWH/Bio-GMOD-0.028 - 07 Jul 2005 18:24:47 UTC

Bio::GMOD::Util::Rearrange - Named parameter processing River stage zero No dependents

Bio::GMOD::Util::Rearrange provides the exported rearrange() function. It is used throughout Bio::GMOD to process named parameters. It is almost essentially lifted in its entirety from Lincoln Stein's CGI.pm....

TWH/Bio-GMOD-0.028 - 07 Jul 2005 18:24:47 UTC

Bio::GMOD::Query::WormBase - Defaults for programmatically interacting with Wormbase River stage zero No dependents

Bio::GMOD::Adaptor::WormBase objects are created internally by the new() method provided by Bio::GMOD::Adaptor. Adaptor::* objects contain appropriate defaults for interacting programmatically with the GMOD of choice. Defaults are read dynamically fr...

TWH/Bio-GMOD-0.028 - 07 Jul 2005 18:24:47 UTC

Bio::GMOD::Adaptor::FlyBase - Defaults for programmatically interacting with Wormbase River stage zero No dependents

STUB DOCUMENTATION - PLEASE EDIT! Bio::GMOD::Adaptor::FlyBase objects are created internally by the new() method provided by Bio::GMOD::Adaptor. Adaptor::* objects contain appropriate defaults for interacting programmatically with the GMOD of choice....

TWH/Bio-GMOD-0.028 - 07 Jul 2005 18:24:47 UTC

Bio::GMOD::Adaptor::generic - A generic adaptor for working with multiple MODs simultaneously River stage zero No dependents

Bio::GMOD::Adaptor::generic objects are created internally by the new() method provided by Bio::GMOD::Adaptor. This adaptor is typically used when a script needs to work with multiple MODs within the same session....

TWH/Bio-GMOD-0.028 - 07 Jul 2005 18:24:47 UTC

Bio::GMOD::Adaptor::WormBase - Defaults for programmatically interacting with Wormbase River stage zero No dependents

Bio::GMOD::Adaptor::WormBase objects are created internally by the new() method provided by Bio::GMOD::Adaptor. Adaptor::* objects contain appropriate defaults for interacting programmatically with the GMOD of choice. Defaults are read dynamically fr...

TWH/Bio-GMOD-0.028 - 07 Jul 2005 18:24:47 UTC

Bio::GMOD::Util::CheckVersions - Find current versions of GMOD installations River stage zero No dependents

Bio::GMOD::Util::CheckVersions provides several methods for determining the current live and development versions of a MOD. In addition it includes several methods for fetching locally installed version as well as versions of installed packages, usef...

TWH/Bio-GMOD-0.028 - 07 Jul 2005 18:24:47 UTC

Bio::GMOD::Admin::Monitor::blat - Monitor a BLAT server River stage zero No dependents

Bio::GMOD is a unified API for accessing various Model Organism Databases. It is a part of the Generic Model Organism Database project, as well as distributed on CPAN. MODs are highly curated resources of biological knowledge. MODs typically incorpor...

TWH/Bio-GMOD-0.028 - 07 Jul 2005 18:24:47 UTC

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