Bio::HTS - XS module providing an interface to htslib River stage zero No dependents

The beginnings of an XS wrapper around the many useful methods in htslib. All the other perl modules use the old samtools or aren't on cpan. So far only Tabix is supported. Contributions welcome on github: <http://www.github.com/congenica/perl_htslib...

NYET/Bio-HTS-v0.0.1 - 11 Jan 2016 11:58:54 UTC

Bio::HTS::VCF - start of an interface to the bcf/vcf utilities in htslib River stage zero No dependents

NYET/Bio-HTS-v0.0.1 - 11 Jan 2016 11:58:54 UTC

Bio::HTS::File - XS module providing an interface to c htsFile structs River stage zero No dependents

By itself this module is pretty useless, you'll probably use it with other modules under HTS (currently only Tabix exists) Methods "hts_open" Returns a pointer to the htsFile C struct. You must call hts_close before the returned pointer goes out of s...

NYET/Bio-HTS-v0.0.1 - 11 Jan 2016 11:58:54 UTC

Bio::HTS::Tabix - Object oriented access to the underlying tbx C methods River stage zero No dependents

A high level object oriented interface to the htslib tabix (tbx.h) api. Currently it only supports retrieving regions from a tabixed file, because that's all I needed it for. Attributes "filename" The gzipped file you want to query. Must have a filen...

NYET/Bio-HTS-v0.0.1 - 11 Jan 2016 11:58:54 UTC

Bio::HTS::Tabix::Iterator - XS module wrapping around a tabix hts_itr_t River stage zero No dependents

This is returned from Bio::HTS::Tabix, the only method you need to care about is 'next'. Don't go importing this and calling new on it if you value your sanity, it won't work. Methods "next" Returns a string with the line from the tabix iterator...

NYET/Bio-HTS-v0.0.1 - 11 Jan 2016 11:58:54 UTC

lib/Bio/HTS/Logger.pm River stage zero No dependents

NYET/Bio-HTS-v0.0.1 - 11 Jan 2016 11:58:54 UTC

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