AI::Genetic - A pure Perl genetic algorithm implementation.

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This module implements a Genetic Algorithm (GA) in pure Perl. Other Perl modules that achieve the same thing (perhaps better, perhaps worse) do exist. Please check CPAN. I mainly wrote this module to satisfy my own needs, and to learn something about...

• AI::Genetic::Individual - Base class for AI::Genetic Individuals.
• AI::Genetic::OpMutation - A class that implements various mutation operators.
• AI::Genetic::OpSelection - A class that implements various selection operators.
• 5 more results from AI-Genetic »

AI::Genetic::Pro - Efficient genetic algorithms for professional purpose with support for multiprocessing.

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This module provides efficient implementation of a genetic algorithm for professional purpose with support for multiprocessing. It was designed to operate as fast as possible even on very large populations and big individuals/chromosomes. "AI::Geneti...

• lib/AI/Genetic/Pro/Chromosome.pm
• lib/AI/Genetic/Pro/MCE.pm
• lib/AI/Genetic/Pro/Selection/RouletteDistribution.pm
• 15 more results from AI-Genetic-Pro »

Algorithm::Genetic::Diploid - Extensible implementation of a diploid genetic algorithm

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This utility package can be used as the sole import (i.e. just "use Algorithm::Genetic::Diploid;") to load all the required packages at once. It also provides static factory methods to create instances of these packages, e.g. "create_gene" and so on....

• Algorithm::Genetic::Diploid::Gene - a gene with an expressible function
• Algorithm::Genetic::Diploid::Base - base class for core objects
• Algorithm::Genetic::Diploid::Logger - reports on progress of the experiment
• 5 more results from Algorithm-Genetic-Diploid »

Bio::Chado::Schema::Result::Genetic - Genotypes and mutant alleles

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• Bio::Chado::Schema::Result::Genetic::Phendesc
• Bio::Chado::Schema::Result::Genetic::Genotype
• Bio::Chado::Schema::Result::Genetic::Environment - The environmental component of a phenotype description.
• 16 more results from Bio-Chado-Schema »

canonical-genetic-algorithm.pl - Canonical Genetic Algorithm on a simple fitness function

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A canonical GA uses mutation, crossover, binary representation, and roulette wheel selection. Here mainly for reference, and so that you can peruse to start your own programs. In this case, we are optimizing the Royal Road function, <http://web.cecs....

• Algorithm::Evolutionary::Op::Base - Base class for Algorithm::Evolutionary operators,
• Algorithm::Evolutionary - Perl module for performing paradigm-free evolutionary algorithms.
• Algorithm::Evolutionary::Individual::Bit_Vector - Classic bitstring individual for evolutionary computation; usually called chromosome, and using a different implementation from Algorithm::Evolutionary::Individual::BitString
• 11 more results from Algorithm-Evolutionary »

Bio::MUST::Core::GeneticCode - Genetic code for conceptual translation

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# TODO...

• Bio::MUST::Core::GeneticCode::Factory - Genetic code factory based on NCBI gc.prt file

Evo::GA - Perl extension for genetic algorithms

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A genetic algorithms library EXPORT...

• Evo::GA - Perl extension for genetic algorithms

PDL::GA - Genetic algorithm utilities for PDLs

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• PDL::GA - Genetic algorithm utilities for PDLs

Genetics - Perl modules for building genetic analysis applications.

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• Genetics::API::Analysis::Linkage
• Genetics::Subject
• Genetics::Marker
• 3 more results from Genetics »

fasxl - translate sequences by a genetic code.

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fasxl takes multifasta format DNA or RNA codon sequences or alignments as input, and generates biological translations of those sequences as output. Gapped sequences on input are allowed with the -g, -k or -o options; the gap character "-" is require...

• FAST - FAST Analysis of Sequences Toolbox
• fascodon - counts codon usage
• FAST::Bio::Ontology::OBOEngine - An Ontology Engine for OBO style flat file format from the Gene Ontology Consortium
• 6 more results from FAST »

bioaln - Alignment manipulations based on BioPerl

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bioaln performs common, routine manipulations of sequence alignments based on BioPerl modules including Bio::AlignIO, Bio::SimpleAlign and Bio::Align::Utilities. By default, bioaln assumes that both the input and the output files are in CLUSTALW form...

• biopop - SNP statistics based on BioPerl

Sandy - A straightforward and complete next-generation sequencing read simulator

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SANDY is a bioinformatics tool that provides a simple engine to simulate next-generation sequencing for genomic and transcriptomic data. Simulated data works as experimental control - a key step to optimize NGS analysis - in comparison to hypothetica...

• App::Sandy - App builder that simulates single-end and paired-end reads.

Bio::KBase::CDMI::CDMI_EntityAPIImpl

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• Bio::KBase::CDMI::Client

PDL::Opt::NonLinear - Non Linear optimization routines

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This module provides routine that solves optimization problem: minimize f(x) x Some routines can handle bounds, so: minimize f(x) x subject to low <= x <= up...

Mecom - A Perl module for protein contact interfaces evolutive analysis

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This module integrates a workflow aimed to address the evolvability of the contact interfaces within a protein complex. The method "Mecom->run" launchs the whole analysis. Also, such workflow is divided into the following steps: Step 1, Structural an...

• Mecom - A Perl program for protein contact interfaces evolutive analysis

pod::INSTALL

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• pod::CONFIGURE_HOWTO

aivolver - Evolves optimal artificial neural networks

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Artificial neural networks (ANNs) are decision-making machines that develop their capabilities by training on input data. During this training, the ANN builds a topology of input neurons, hidden neurons, and output neurons that respond to signals in ...

Ftree::Name - family tree generator

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• Ftree::FamilyTreeInfo - family tree generator

cub_seq.pl - a program to calculate sequence codon usage bias metrics and other sequence parameters.

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• tai_codon.pl - a program to calculate tAI of each codon
• Bio::CUA - Codon Usage Analyzer.
• cai_codon.pl - a program to calculate CAI for each codon
• 4 more results from Bio-CUA »

HTML::Tree::AboutTrees - article on tree-shaped data structures in Perl

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The following article by Sean M. Burke first appeared in *The Perl Journal* #18 and is copyright 2000 The Perl Journal. It appears courtesy of Jon Orwant and The Perl Journal. This document may be distributed under the same terms as Perl itself....