AI::Genetic - A pure Perl genetic algorithm implementation. River stage zero No dependents

This module implements a Genetic Algorithm (GA) in pure Perl. Other Perl modules that achieve the same thing (perhaps better, perhaps worse) do exist. Please check CPAN. I mainly wrote this module to satisfy my own needs, and to learn something about...

AQUMSIEH/AI-Genetic-0.05 - 11 May 2007 17:51:29 UTC - Search in distribution

AI::Genetic::Pro - Efficient genetic algorithms for professional purpose with support for multiprocessing. River stage zero No dependents

This module provides efficient implementation of a genetic algorithm for professional purpose with support for multiprocessing. It was designed to operate as fast as possible even on very large populations and big individuals/chromosomes. "AI::Geneti...

STRZELEC/AI-Genetic-Pro-1.005 - 08 Dec 2020 20:37:15 UTC - Search in distribution

Algorithm::Genetic::Diploid - Extensible implementation of a diploid genetic algorithm River stage one • 1 direct dependent • 1 total dependent

This utility package can be used as the sole import (i.e. just "use Algorithm::Genetic::Diploid;") to load all the required packages at once. It also provides static factory methods to create instances of these packages, e.g. "create_gene" and so on....

RVOSA/Algorithm-Genetic-Diploid-0.3 - 04 Jun 2014 22:41:04 UTC - Search in distribution

Bio::Chado::Schema::Result::Genetic - Genotypes and mutant alleles River stage one • 3 direct dependents • 3 total dependents

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC - Search in distribution

canonical-genetic-algorithm.pl - Canonical Genetic Algorithm on a simple fitness function River stage one • 3 direct dependents • 4 total dependents

A canonical GA uses mutation, crossover, binary representation, and roulette wheel selection. Here mainly for reference, and so that you can peruse to start your own programs. In this case, we are optimizing the Royal Road function, <http://web.cecs....

JMERELO/Algorithm-Evolutionary-0.82.1 - 29 Mar 2021 11:30:17 UTC - Search in distribution

Bio::MUST::Core::GeneticCode - Genetic code for conceptual translation River stage one • 9 direct dependents • 9 total dependents

# TODO...

DBAURAIN/Bio-MUST-Core-0.212670 - 24 Sep 2021 14:29:46 UTC - Search in distribution

Evo::GA - Perl extension for genetic algorithms River stage zero No dependents

A genetic algorithms library EXPORT...

KOBOLDWIZ/Evo-GA-0.1.13 - 07 Jul 2021 08:50:23 UTC - Search in distribution
  • Evo::GA - Perl extension for genetic algorithms

PDL::GA - Genetic algorithm utilities for PDLs River stage zero No dependents

MOOCOW/PDL-GA-0.08 - 06 Jun 2017 08:56:19 UTC - Search in distribution
  • PDL::GA - Genetic algorithm utilities for PDLs

Genetics - Perl modules for building genetic analysis applications. River stage zero No dependents

SLMATH/Genetics-0.03 - 13 Jan 2002 23:57:50 UTC - Search in distribution

fasxl - translate sequences by a genetic code. River stage zero No dependents

fasxl takes multifasta format DNA or RNA codon sequences or alignments as input, and generates biological translations of those sequences as output. Gapped sequences on input are allowed with the -g, -k or -o options; the gap character "-" is require...

DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution

bioaln - Alignment manipulations based on BioPerl River stage zero No dependents

bioaln performs common, routine manipulations of sequence alignments based on BioPerl modules including Bio::AlignIO, Bio::SimpleAlign and Bio::Align::Utilities. By default, bioaln assumes that both the input and the output files are in CLUSTALW form...

ROCKY/Bio-BPWrapper-1.13 - 02 Apr 2020 19:04:03 UTC - Search in distribution
  • biopop - SNP statistics based on BioPerl

Sandy - A straightforward and complete next-generation sequencing read simulator River stage zero No dependents

SANDY is a bioinformatics tool that provides a simple engine to simulate next-generation sequencing for genomic and transcriptomic data. Simulated data works as experimental control - a key step to optimize NGS analysis - in comparison to hypothetica...

TMILLER/App-Sandy-0.23 - 10 Mar 2019 20:24:40 UTC - Search in distribution
  • App::Sandy - App builder that simulates single-end and paired-end reads.

PDL::Opt::NonLinear - Non Linear optimization routines River stage zero No dependents

This module provides routine that solves optimization problem: minimize f(x) x Some routines can handle bounds, so: minimize f(x) x subject to low <= x <= up...

ETJ/PDL-Opt-NonLinear-0.08 - 21 Feb 2022 08:00:16 UTC - Search in distribution

Mecom - A Perl module for protein contact interfaces evolutive analysis River stage zero No dependents

This module integrates a workflow aimed to address the evolvability of the contact interfaces within a protein complex. The method "Mecom->run" launchs the whole analysis. Also, such workflow is divided into the following steps: Step 1, Structural an...

HVALVERDE/Mecom-1.15 - 13 Jul 2013 18:55:01 UTC - Search in distribution
  • Mecom - A Perl program for protein contact interfaces evolutive analysis

pod::INSTALL River stage zero No dependents

LDS/GBrowse-2.56 - 15 Jan 2017 21:29:11 UTC - Search in distribution

aivolver - Evolves optimal artificial neural networks River stage zero No dependents

Artificial neural networks (ANNs) are decision-making machines that develop their capabilities by training on input data. During this training, the ANN builds a topology of input neurons, hidden neurons, and output neurons that respond to signals in ...

RVOSA/AI-FANN-Evolving-0.4 - 04 Jun 2014 22:42:31 UTC - Search in distribution

Ftree::Name - family tree generator River stage zero No dependents

MISHIN/FamilyTreeInfo-2.3.41 - 24 Apr 2016 14:01:49 UTC - Search in distribution

cub_seq.pl - a program to calculate sequence codon usage bias metrics and other sequence parameters. River stage zero No dependents

FORTUNE/Bio-CUA-1.04 - 12 Jul 2015 19:52:07 UTC - Search in distribution

HTML::Tree::AboutTrees - article on tree-shaped data structures in Perl River stage three • 171 direct dependents • 990 total dependents

The following article by Sean M. Burke first appeared in *The Perl Journal* #18 and is copyright 2000 The Perl Journal. It appears courtesy of Jon Orwant and The Perl Journal. This document may be distributed under the same terms as Perl itself....

KENTNL/HTML-Tree-5.07 - 31 Aug 2017 08:53:16 UTC - Search in distribution
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