AcePerl provides an interface to the ACEDB object-oriented database. Both read and write access is provided, and ACE objects are returned as similarly-structured Perl objects. Multiple databases can be opened simultaneously. You will interact with se...

IETF::ACE - Perl extension for IETF IDN WG ACE character conversions Subroutines UCS4toName UCS4toUPlus UTF5toUCS4 GetCharFromUTF5 UCS4toRACE RACEtoUCS4 UCS4toLACE LACEtoUCS4 Base32Encode Base32Decode CheckForSTD13Name CheckForBadSurrogates HexOut De...

This class is provided for low-level access to local (non-networked) Ace databases via the *giface* program. You will generally not need to access it directly. Use Ace.pm instead. For the sake of completeness, the method can also use the *aceclient* ...

This class is provided for access to AceDB class models. It provides the model in human-readable form, and does some limited but useful parsing on your behalf. Ace::Model objects are obtained either by calling an Ace database handle's model() method ...

*Ace::Object* is the base class for objects returned from ACEDB databases. Currently there is only one type of *Ace::Object*, but this may change in the future to support more interesting object-specific behaviors. Using the *Ace::Object* interface, ...

Authen::ACE provides a client interface to a Security Dynamics SecurID ACE server. SecurID authentication can be added to any Perl application using Authen::ACE. Instantiation of an object into the Authen::ACE class will establish a connection to the...

*Ace::Sequence*, and its allied classes Ace::Sequence::Feature and Ace::Sequence::FeatureList, provide a convenient interface to the ACeDB Sequence classes and the GFF sequence feature file format. Using this class, you can define a region of the gen...

The Ace::Iterator class implements a persistent query on an Ace database. You can create multiple simultaneous queries and retrieve objects from each one independently of the others. This is useful when a query is expected to return more objects than...

This provides a standard BioPerl database access to Ace, using Lincoln Steins excellent AcePerl module. You need to download and install the aceperl module from http://stein.cshl.org/AcePerl/ before this interface will work. This interface is designe...

This object can transform Bio::Seq objects to and from ace file format. It only parses a DNA or Peptide objects contained in the ace file, producing PrimarySeq objects from them. All other objects in the files will be ignored. It doesn't attempt to p...

None. Used internally by Ace::Graphics::Panel....

Ace::Sequence::Gene is a subclass of Ace::Sequence::Feature. It inherits all the methods of Ace::Sequence::Feature, but adds the ability to retrieve the annotated introns and exons of the gene....

The Ace::Graphics::Track class is used by Ace::Graphics::Panel to lay out a set of sequence features using a uniform glyph type. You will ordinarily work with panels rather than directly with tracks....

*Ace::Sequence::Homol* is a subclass of Ace::Object (not Ace::Sequence) which is specialized for returning information about a DNA or protein homology. This is a temporary placeholder for a more sophisticated homology class which will include support...

"Win32::Security::ACE" and its subclasses provide an interface for interacting with Win32 ACEs (Access Control Entries). The subclasses allow for variation in mask behavior (different privileges apply to files than apply to registry keys and so forth...

Ace::Graphics::Glyph is the base class for all glyph objects. Each glyph is a wrapper around an Ace::Sequence::Feature object, knows how to render itself on an Ace::Graphics::Panel, and has a variety of configuration variables. End developers will no...

*Ace::Sequence::Multi* transparently combines information stored about a sequence in a reference database with features tables from any number of annotation databases. The resulting object can be used just like an Ace::Sequence object, except that th...