Boulder::XML - XML format input/output for Boulder streams River stage zero No dependents

Boulder::XML generates BoulderIO streams from XML files and/or streams. It is also able to output Boulder Stones in XML format. Its semantics are similar to those of Boulder::Stream, except that there is never any pass-through behavior. Because XML w...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::Util - Utility methods for simple Boulder IO interactions. River stage zero No dependents

Boulder::Util is a utility package for manipulating simple Boulder IO records in a lightweight fashion. Boulder IO is the native format output by the CGI package's "save" method. While working on a project I used that method to serialize the state of...

TIMA/Boulder-Util-0.1 - 26 Mar 2005 14:41:18 GMT

Boulder::Blast - Parse and read BLAST files River stage zero No dependents

The *Boulder::Blast* class parses the output of the Washington University (WU) or National Cenber for Biotechnology Information (NCBI) series of BLAST programs and turns them into *Stone* records. You may then use the standard Stone access methods to...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::Store - Simple persistent storage for Stone tag/value objects River stage zero No dependents

Boulder::Store provides persistent storage for Boulder objects using a simple DB_File implementation. To use it, you need to have Berkeley db installed (also known as libdb), and the Perl DB_File module. See the DB_File package for more details on ob...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::Stream - Read and write tag/value data from an input stream River stage zero No dependents

Boulder::Stream provides stream-oriented access to Boulder IO hierarchical tag/value data. It can be used in a magic tied filehandle mode, as shown in the synopsis, or in object-oriented mode. Using tied filehandles, Stone objects are read from input...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::String - Read and write tag/value data from a string. River stage zero No dependents

Boulder::String provides access to Boulder IO hierarchical tag/value data. Stone objects printed to the tied string are appended to the string in Boulder format....

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::Simple - a class for simple Boulder IO interaction. DEPRECATED. Use Boulder::Util instead. River stage zero No dependents

Boulder::Simple is a simple lightweight class for manipulating Boulder IO records. DEPRECATED. Use Boulder::Util instead. Boulder IO is the native format output by the CGI package's "save" method. While working on a project I used that method to seri...

TIMA/Boulder-Simple-0.021 - 26 Mar 2005 14:41:36 GMT

Boulder/Labbase.pm River stage zero No dependents

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::Omim - Fetch Omim data records as parsed Boulder Stones River stage zero No dependents

Boulder::Omim provides retrieval and parsing services for OMIM records Boulder::Omim provides retrieval and parsing services for NCBI Omim records. It returns Omim entries in Stone format, allowing easy access to the various fields and values. Boulde...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::Unigene - Fetch Unigene data records as parsed Boulder Stones River stage zero No dependents

Boulder::Unigene provides retrieval and parsing services for UNIGENE records Boulder::Unigene provides retrieval and parsing services for NCBI Unigene records. It returns Unigene entries in Stone format, allowing easy access to the various fields and...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::Medline - Fetch Medline data records as parsed Boulder Stones River stage zero No dependents

Boulder::Medline provides retrieval and parsing services for Medline records Boulder::Medline provides retrieval and parsing services for NCBI Medline records. It returns Medline entries in Stone format, allowing easy access to the various fields and...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::Blast::WU - Parse and read WU-BLAST files River stage zero No dependents

Specialized parser for WUBLAST format BLAST output. Loaded automatically by Boulder::Blast....

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::LocusLink - Fetch LocusLink data records as parsed Boulder Stones River stage zero No dependents

Boulder::LocusLink provides retrieval and parsing services for LocusLink records Boulder::LocusLink provides retrieval and parsing services for NCBI LocusLink records. It returns Unigene entries in Stone format, allowing easy access to the various fi...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::Blast::NCBI - Parse and read NCBI BLAST files River stage zero No dependents

Specialized parser for NCBI format BLAST output. Loaded automatically by Boulder::Blast....

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::Genbank - Fetch Genbank data records as parsed Boulder Stones River stage zero No dependents

Boulder::Genbank provides retrieval and parsing services for NCBI Genbank-format records. It returns Genbank entries in Stone format, allowing easy access to the various fields and values. Boulder::Genbank is a descendent of Boulder::Stream, and prov...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

Boulder::Swissprot - Fetch SwissProt data records as parsed Boulder Stones River stage zero No dependents

== missing ==...

LDS/Boulder-1.30 - 14 Dec 2002 02:06:29 GMT

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