Run::Env - running environment detection River stage one • 1 direct dependent • 1 total dependent

Usefull in cases if the program/script should behave in slightly different way depending on if it's run on developers machine, user acceptance test server, staging server or a production server. There can be 4 running environments: qw{ development ua...

JKUTEJ/Run-Env-0.08 - 25 Nov 2010 14:15:35 GMT

GTM::Run - run interactive processes River stage zero No dependents

This module is a helper-module for running interactive processes in a "expect"-like way....

OESI/GTM-0.6 - 23 Feb 2010 20:22:12 GMT

IPC::Run - system() and background procs w/ piping, redirs, ptys (Unix, Win32) River stage four • 146 direct dependents • 1500 total dependents

IPC::Run allows you to run and interact with child processes using files, pipes, and pseudo-ttys. Both system()-style and scripted usages are supported and may be mixed. Likewise, functional and OO API styles are both supported and may be mixed. Vari...

TODDR/IPC-Run-20180523.0 - 23 May 2018 17:24:25 GMT

IPC::Run::Debug - debugging routines for IPC::Run River stage four • 146 direct dependents • 1500 total dependents

Controls IPC::Run debugging. Debugging levels are now set by using words, but the numbers shown are still supported for backwards compatibility: 0 none disabled (special, see below) 1 basic what's running 2 data what's being sent/received 3 details w...

TODDR/IPC-Run-20180523.0 - 23 May 2018 17:24:25 GMT

POE::Wheel::Run - portably run blocking code and programs in subprocesses River stage three • 407 direct dependents • 567 total dependents

POE::Wheel::Run executes a program or block of code in a subprocess, created the usual way: using fork(). The parent process may exchange information with the child over the child's STDIN, STDOUT and STDERR filehandles. In the parent process, the POE...

RCAPUTO/POE-1.367 - 03 Jun 2015 14:20:42 GMT

Test::Run::Straps - analyse the test results by using TAP::Parser. River stage two • 9 direct dependents • 12 total dependents

SHLOMIF/Test-Run-0.0304 - 13 Dec 2015 11:12:24 GMT

Catmandu::Cmd::run - run a fix command River stage two • 94 direct dependents • 99 total dependents

NICS/Catmandu-1.10 - 30 Aug 2018 08:40:57 GMT

HTTP::LoadGen::Run - HTTP client for HTTP::LoadGen River stage zero No dependents

"HTTP::LoadGen::Run" implements the HTTP client for HTTP::LoadGen. Functions $rc=HTTP::LoadGen::Run::run_url $method, $scheme, $host, $port, $uri, $param performs one HTTP request as specified by the parameters. See URLList in HTTP::LoadGen for more ...

OPI/HTTP-LoadGen-0.07 - 15 Dec 2010 11:34:05 GMT

Rex::Commands::Run - Execute a remote command River stage two • 11 direct dependents • 12 total dependents

With this module you can run a command....

JFRIED/Rex-1.6.0 - 26 Jan 2018 20:25:39 GMT

Test::Run::CmdLine - Analyze tests from the command line using Test::Run River stage two • 7 direct dependents • 10 total dependents

SHLOMIF/Test-Run-CmdLine-0.0131 - 20 Jan 2016 11:36:40 GMT

Bio::Grid::Run::SGE - Distribute (biological) analyses on the local SGE grid River stage zero No dependents

Control flow in Bio::Grid::Run::SGE The general flow starts at running the cluster script. The script defines an index and an iterator. Indices describe how to split the data into chunks, whereas iterators describe in what order these chunks get fed ...

JWB/Bio-Grid-Run-SGE-0.065 - 04 Jul 2018 21:21:00 GMT

Bio::Tools::Run::MCS - Wrapper for MCS River stage one • 6 direct dependents • 7 total dependents

This is a wrapper for running the MCS (binCons) scripts by Elliott H Margulies. You can get details here: http://zoo.nhgri.nih.gov/elliott/mcs_doc/. MCS is used for the prediciton of transcription factor binding sites and other regions of the genome ...

CJFIELDS/BioPerl-Run-1.007002 - 15 Sep 2017 04:00:53 GMT

Bio::Tools::Run::Seg - Object for identifying low complexity regions in a given protein seequence. River stage one • 6 direct dependents • 7 total dependents

Seg is a program which identifies low complexity regions in proteins. It was developed by Wootton and Federhen at NCBI....

CJFIELDS/BioPerl-Run-1.007002 - 15 Sep 2017 04:00:53 GMT

Bio::Tools::Run::Meme - Wrapper for Meme Program River stage one • 6 direct dependents • 7 total dependents

This is a wrapper for running meme, a transcription factor binding site prediction program. It can be found here: http://meme.sdsc.edu/meme4/meme-download.html You can try supplying normal meme command-line arguments to new(), eg. new(-mod => 'oops')...

CJFIELDS/BioPerl-Run-1.007002 - 15 Sep 2017 04:00:53 GMT

Bio::Tools::Run::Coil - wrapper for ncoils program River stage one • 6 direct dependents • 7 total dependents

This module is a wrapper for the ncoils program available via <http://www.russell.embl-heidelberg.de/coils/coils.tar.gz> for predicting coiled coils in protein sequences. By default it looks for an executable called *ncoils* and data/parameter files ...

CJFIELDS/BioPerl-Run-1.007002 - 15 Sep 2017 04:00:53 GMT

MooseX::Runnable::Run - Run a MooseX::Runnable class as an application River stage one • 2 direct dependents • 2 total dependents

This is a utility module that runs a MooseX::Runnable class with MooseX::Runnable::Invocation....

ETHER/MooseX-Runnable-0.10 - 13 Mar 2016 00:42:15 GMT

App::Cme::Command::run - Run a cme script River stage one • 1 direct dependent • 3 total dependents

Run a script written with cme DSL (Design specific language) or in plain Perl. A script passed by name is searched in "~/.cme/scripts", "/etc/cme/scripts" or "/usr/share/perl5/Config/Model/scripts". E.g. with "cme run foo", "cme" loads either "~/.cme...

DDUMONT/App-Cme-1.029 - 20 Aug 2018 13:32:39 GMT

Bio::Tools::Run::Hmmer - Wrapper for local execution of hmmalign, hmmbuild, hmmcalibrate, hmmemit, hmmpfam, hmmsearch River stage one • 6 direct dependents • 7 total dependents

Wrapper module for Sean Eddy's HMMER suite of program to allow running of hmmalign, hmmbuild, hmmcalibrate, hmmemit, hmmpfam and hmmsearch. Binaries are available at http://hmmer.janelia.org/ You can pass most options understood by the command-line p...

CJFIELDS/BioPerl-Run-1.007002 - 15 Sep 2017 04:00:53 GMT

Bio::Tools::Run::ERPIN - Wrapper for local execution of the ERPIN suite of programs. River stage one • 6 direct dependents • 7 total dependents

CJFIELDS/BioPerl-Run-1.007002 - 15 Sep 2017 04:00:53 GMT

Bio::Tools::Run::Tmhmm - Object for identifying transmembrane helixes in a given protein seequence. River stage one • 6 direct dependents • 7 total dependents

Tmhmm is a program for identifying transmembrane helices in proteins. You must have the environmental variable TMHMMDIR set to the base directory where *tmhmm* and it's associated data/option files reside (NOT the bin directory where the actual execu...

CJFIELDS/BioPerl-Run-1.007002 - 15 Sep 2017 04:00:53 GMT

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