=head1 LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
Copyright [2016-2024] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
=cut
=head1 CONTACT
Please email comments or questions to the public Ensembl
Questions may also be sent to the Ensembl help desk at
=cut
=head1 NAME
Bio::EnsEMBL::IdMapping::TinyTranslation - lightweight translation object
=head1 SYNOPSIS
if ( my $tl = $tr->translation ) {
my $lightweight_tl =
Bio::EnsEMBL::IdMapping::TinyTranslation->new_fast( [
$tl->dbID, $tl->stable_id,
$tl->version, $tl->created_date,
$tl->modified_date, $tr->dbID,
$tr->translate->seq,
] );
}
=head1 DESCRIPTION
This is a lightweight translation object for the stable Id mapping. See
the documentation in TinyFeature for general considerations about its
design.
=head1 METHODS
transcript_id
seq
=cut
$Bio::EnsEMBL::IdMapping::TinyTranslation::VERSION = '112.0_54'; # TRIAL
$Bio::EnsEMBL::IdMapping::TinyTranslation::VERSION = '112.054';
# internal data structure (array indices):
#
# 0-4 see TinyFeature
# 5 transcript_id
# 6 seq
use strict;
no warnings 'uninitialized';
our @ISA = qw(Bio::EnsEMBL::IdMapping::TinyFeature);
use Bio::EnsEMBL::Utils::Exception qw(throw warning);
=head2 transcript_id
Arg[1] : (optional) Int - the transcript internal Id ("dbID")
Description : Getter/setter for the transcript internal Id this translation is
attached to.
Return type : Int
Exceptions : none
Caller : general
Status : At Risk
: under development
=cut
sub transcript_id {
my $self = shift;
$self->[5] = shift if (@_);
return $self->[5];
}
=head2 seq
Arg[1] : (optional) String - the translation's sequence
Description : Getter/setter for the translation's sequence.
Return type : String
Exceptions : none
Caller : general
Status : At Risk
: under development
=cut
sub seq {
my $self = shift;
$self->[6] = shift if (@_);
return $self->[6];
}
1;