---
global:
-
indir
:
t/example/data/raw/test005
-
outdir
:
t/example/data/processed/test005
-
file_rule
:
(.*).csv
-
min
:
1
rules:
-
backup
:
process:
cp
{
$self->indir
}
/
{
$sample
}
.csv
{
$self->outdir
}
/
{
$sample
}
.csv
-
grep_VARA
:
process:
|
echo
"Working on {$self->{indir}}/{$sample}.csv"
grep -i
"VARA"
{
$self->indir
}
/
{
$sample
}
.csv >>
{
$self->outdir
}
/
{
$sample
}
.grep_VARA.csv
-
grep_VARB
:
process:
|
grep -i
"VARB"
{
$self->indir
}
/
{
$sample
}
.grep_VARA.csv >>
{
$self->outdir
}
/
{
$sample
}
.grep_VARA.grep_VARB.csv