BLASTN 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SGN-U234234
(820 letters)
Database: SGN Tomato Combined - WGS, BAC, and unigene sequences
626,541 sequences; 1,350,414,477 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SGN-U578206 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|27884018|g... 1602 0.0
SL2.40ch06 961 0.0
SGN-U580132 Tomato 200607#2 [61 ESTs aligned] (*GB) gi|27883932|... 511 e-143
SGN-U578259 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|27883932|g... 367 3e-99
LE_HBa0209K10_T7_371815 186 6e-45
SL2.40ch12 149 1e-33
>SGN-U578206 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|27884018|gb|AAO23981.1|
(e_value=0) vacuolar H+-ATPase A2 subunit isoform;
V-ATPase A2 subunit isoform [Lycopersicon esculentum];
(*ATH) AT1G78900.1 (e_value=0) Symbol: VHA-A | Encodes
catalytic subunit A of the vacuolar ATP synthase.
Mutants are devoid of vacuolar ATPase activity as subunit
A is encoded only by this gene and show strong defects in
male gametophyte development and in Golgi stack
morphology... ; (*SWP) sp|P09469|VATA_DAUCA (e_value=0)
Vacuolar ATP synthase catalytic subunit A OS=Daucus
carota;
Length = 2361
Score = 1602 bits (808), Expect = 0.0
Identities = 811/812 (99%)
Strand = Plus / Minus
Query: 1 ccagaaacatgtattatagacctttattacaaagttattgcacatctgataacaacaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2361 ccagaaacatgtattatagacctttattacaaagttattgcacatctgataacaacaaaa 2302
Query: 61 cgaaaaccagtgcaatacatacccaagtgatcataatgcttaggtacactttgctgtcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2301 cgaaaaccagtgcaatacatacccaagtgatcataatgcttaggtacactttgctgtcac 2242
Query: 121 ctttaattttcaagtctgatgataaagagaggattgaaactgaataaattcacctaaacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2241 ctttaattttcaagtctgatgataaagagaggattgaaactgaataaattcacctaaacg 2182
Query: 181 accccttgcctaaccgtgttacaaaaataaattgagttacaccaactaaacaacaaattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2181 accccttgcctaaccgtgttacaaaaataaattgagttacaccaactaaacaacaaattt 2122
Query: 241 aaggcaccatcccatttttacttatccagctctagcatccaaacgaccatttcagtgtgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2121 aaggcaccatcccatttttacttatccagctctagcatccaaacgaccatttcagtgtgg 2062
Query: 301 acaacagcacataactgattcaatggttggacccgtccaagaactggaatacatctactg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2061 acaacagcacataactgattcaatggttggacccgtccaagaactggaatacatctactg 2002
Query: 361 aagtgaggacttatcgagtttcatcctcaaggttgcggaaaccagcagtcaaatcatcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2001 aagtgaggacttatcgagtttcatcctcaaggttgcggaaaccagcagtcaaatcatcat 1942
Query: 421 gaagcttcttaaacttggctaccaaagcatcctctccttcggctggatcctcaaattttt 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1941 gaagcttcttaaacttggctaccaaagcatcctctccttcgggtggatcctcaaattttt 1882
Query: 481 gggacaccaaacggtagaataaatcccctaggcgatgcttaatgagagtgtaggtcatct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1881 gggacaccaaacggtagaataaatcccctaggcgatgcttaatgagagtgtaggtcatct 1822
Query: 541 tctggccatccataccagctcctcgttcaacggcctggttggctaagttatagaaatgga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1821 tctggccatccataccagctcctcgttcaacggcctggttggctaagttatagaaatgga 1762
Query: 601 taatattccgtaacatccaaacagacttgtagaaaggacagaatttgtcgtacggagtaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1761 taatattccgtaacatccaaacagacttgtagaaaggacagaatttgtcgtacggagtaa 1702
Query: 661 atgcattttgtgcaaggtagtcctccctcaaaagctttgcagtttccaaagtgattttat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1701 atgcattttgtgcaaggtagtcctccctcaaaagctttgcagtttccaaagtgattttat 1642
Query: 721 ctgtttcagctagagcatctttaccaacaagttgcacaatttcatttaggtcatcctccc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1641 ctgtttcagctagagcatctttaccaacaagttgcacaatttcatttaggtcatcctccc 1582
Query: 781 tttgcagaacctcacgggcttttgtccttatg 812
||||||||||||||||||||||||||||||||
Sbjct: 1581 tttgcagaacctcacgggcttttgtccttatg 1550
>SL2.40ch06
Length = 46041636
Score = 961 bits (485), Expect = 0.0
Identities = 485/485 (100%)
Strand = Plus / Plus
Query: 1 ccagaaacatgtattatagacctttattacaaagttattgcacatctgataacaacaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36408670 ccagaaacatgtattatagacctttattacaaagttattgcacatctgataacaacaaaa 36408729
Query: 61 cgaaaaccagtgcaatacatacccaagtgatcataatgcttaggtacactttgctgtcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36408730 cgaaaaccagtgcaatacatacccaagtgatcataatgcttaggtacactttgctgtcac 36408789
Query: 121 ctttaattttcaagtctgatgataaagagaggattgaaactgaataaattcacctaaacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36408790 ctttaattttcaagtctgatgataaagagaggattgaaactgaataaattcacctaaacg 36408849
Query: 181 accccttgcctaaccgtgttacaaaaataaattgagttacaccaactaaacaacaaattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36408850 accccttgcctaaccgtgttacaaaaataaattgagttacaccaactaaacaacaaattt 36408909
Query: 241 aaggcaccatcccatttttacttatccagctctagcatccaaacgaccatttcagtgtgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36408910 aaggcaccatcccatttttacttatccagctctagcatccaaacgaccatttcagtgtgg 36408969
Query: 301 acaacagcacataactgattcaatggttggacccgtccaagaactggaatacatctactg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36408970 acaacagcacataactgattcaatggttggacccgtccaagaactggaatacatctactg 36409029
Query: 361 aagtgaggacttatcgagtttcatcctcaaggttgcggaaaccagcagtcaaatcatcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36409030 aagtgaggacttatcgagtttcatcctcaaggttgcggaaaccagcagtcaaatcatcat 36409089
Query: 421 gaagcttcttaaacttggctaccaaagcatcctctccttcggctggatcctcaaattttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36409090 gaagcttcttaaacttggctaccaaagcatcctctccttcggctggatcctcaaattttt 36409149
Query: 481 gggac 485
|||||
Sbjct: 36409150 gggac 36409154
Score = 202 bits (102), Expect = 1e-49
Identities = 105/106 (99%)
Strand = Plus / Plus
Query: 651 tacggagtaaatgcattttgtgcaaggtagtcctccctcaaaagctttgcagtttccaaa 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36409850 tacggagtaaatgcattttgtgcaaggtagtcctccctcaaaagctttgcagtttccaaa 36409909
Query: 711 gtgattttatctgtttcagctagagcatctttaccaacaagttgca 756
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 36409910 gtgattttatctgtttcagctagagcatctttaccaacaagctgca 36409955
Score = 186 bits (94), Expect = 6e-45
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 484 acaccaaacggtagaataaatcccctaggcgatgcttaatgagagtgtaggtcatcttct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36409298 acaccaaacggtagaataaatcccctaggcgatgcttaatgagagtgtaggtcatcttct 36409357
Query: 544 ggccatccataccagctcctcgttcaacggcctg 577
||||||||||||||||||||||||||||||||||
Sbjct: 36409358 ggccatccataccagctcctcgttcaacggcctg 36409391
Score = 159 bits (80), Expect = 1e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 574 cctggttggctaagttatagaaatggataatattccgtaacatccaaacagacttgtaga 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36409692 cctggttggctaagttatagaaatggataatattccgtaacatccaaacagacttgtaga 36409751
Query: 634 aaggacagaatttgtcgtac 653
||||||||||||||||||||
Sbjct: 36409752 aaggacagaatttgtcgtac 36409771
Score = 121 bits (61), Expect = 3e-25
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 752 ttgcacaatttcatttaggtcatcctccctttgcagaacctcacgggcttttgtccttat 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36410852 ttgcacaatttcatttaggtcatcctccctttgcagaacctcacgggcttttgtccttat 36410911
Query: 812 g 812
|
Sbjct: 36410912 g 36410912
>SGN-U580132 Tomato 200607#2 [61 ESTs aligned] (*GB) gi|27883932|gb|AAO23980.1|
(e_value=0) vacuolar H+-ATPase A1 subunit isoform;
V-ATPase A1 subunit isoform [Lycopersicon esculentum];
(*ATH) AT1G78900.1 (e_value=0) Symbol: VHA-A | Encodes
catalytic subunit A of the vacuolar ATP synthase.
Mutants are devoid of vacuolar ATPase activity as subunit
A is encoded only by this gene and show strong defects in
male gametophyte development and in Golgi stack
morphology... ; (*SWP) sp|P09469|VATA_DAUCA (e_value=0)
Vacuolar ATP synthase catalytic subunit A OS=Daucus
carota;
Length = 2454
Score = 511 bits (258), Expect = e-143
Identities = 396/442 (89%)
Strand = Plus / Minus
Query: 371 ttatcgagtttcatcctcaaggttgcggaaaccagcagtcaaatcatcatgaagcttctt 430
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2038 ttatcgagtctcatcctcaaggttgcggaaaccagcaaccaaatcatcatgaagcttctg 1979
Query: 431 aaacttggctaccaaagcatcctctccttcggctggatcctcaaatttttgggacaccaa 490
||||||| | |||| | ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 1978 aaacttgcccaccagaacatcctctccttcagctggatcctcaaacttttgggacaccaa 1919
Query: 491 acggtagaataaatcccctaggcgatgcttaatgagagtgtaggtcatcttctggccatc 550
||||||||| ||||| ||||| || ||||||||||||||||| || || || || |||||
Sbjct: 1918 acggtagaacaaatctcctagacggtgcttaatgagagtgtaagtgattttttgtccatc 1859
Query: 551 cataccagctcctcgttcaacggcctggttggctaagttatagaaatggataatattccg 610
||||||||||||||| ||||||||||||||||| ||||||||||| ||||| || || ||
Sbjct: 1858 cataccagctcctcgctcaacggcctggttggccaagttatagaagtggatgatgttgcg 1799
Query: 611 taacatccaaacagacttgtagaaaggacagaatttgtcgtacggagtaaatgcattttg 670
|||||||||||||| ||||||||||| ||||| || || || || ||||| ||||||||
Sbjct: 1798 caacatccaaacagatttgtagaaagggcagaacttatcatatggcgtaaaagcattttg 1739
Query: 671 tgcaaggtagtcctccctcaaaagctttgcagtttccaaagtgattttatctgtttcagc 730
|||||||||||||||||| ||||| |||||||||||||| || || ||||||||||||||
Sbjct: 1738 tgcaaggtagtcctcccttaaaagttttgcagtttccaaggtaatcttatctgtttcagc 1679
Query: 731 tagagcatctttaccaacaagttgcacaatttcatttaggtcatcctccctttgcagaac 790
|||||||| || || |||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 1678 cagagcatcctttccgacaagttgaacaatttcatttaggtcatcctccctctgcagcac 1619
Query: 791 ctcacgggcttttgtccttatg 812
||||||||||||||||||||||
Sbjct: 1618 ctcacgggcttttgtccttatg 1597
>SGN-U578259 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|27883932|gb|AAO23980.1|
(e_value=1e-98) vacuolar H+-ATPase A1 subunit isoform;
V-ATPase A1 subunit isoform [Lycopersicon esculentum];
(*ATH) AT1G78900.1 (e_value=2e-97) Symbol: VHA-A |
Encodes catalytic subunit A of the vacuolar ATP
synthase. Mutants are devoid of vacuolar ATPase
activity as subunit A is encoded only by this gene and
show strong defects in male gametophyte development and
in Golgi stack morphology... ; (*SWP)
sp|O23654|VATA_ARATH (e_value=2e-96) Vacuolar ATP
synthase catalytic subunit A OS=Arabidopsis thaliana
GN=At1g78900;
Length = 851
Score = 367 bits (185), Expect = 3e-99
Identities = 293/329 (89%)
Strand = Plus / Minus
Query: 484 acaccaaacggtagaataaatcccctaggcgatgcttaatgagagtgtaggtcatcttct 543
|||||||||||||||| ||||| ||||| || ||||||||||||||||| || || || |
Sbjct: 541 acaccaaacggtagaacaaatctcctagacggtgcttaatgagagtgtaagtgatttttt 482
Query: 544 ggccatccataccagctcctcgttcaacggcctggttggctaagttatagaaatggataa 603
| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |
Sbjct: 481 gtccatccataccagctcctcgctcaacggcctggttggccaagttatagaagtggatga 422
Query: 604 tattccgtaacatccaaacagacttgtagaaaggacagaatttgtcgtacggagtaaatg 663
| || || |||||||||||||| ||||||||||| ||||| || || || || ||||| |
Sbjct: 421 tgttgcgcaacatccaaacagatttgtagaaagggcagaacttatcatatggcgtaaaag 362
Query: 664 cattttgtgcaaggtagtcctccctcaaaagctttgcagtttccaaagtgattttatctg 723
||||||||||||||||||||||||| ||||| |||||||||||||| || || |||||||
Sbjct: 361 cattttgtgcaaggtagtcctcccttaaaagttttgcagtttccaaggtaatcttatctg 302
Query: 724 tttcagctagagcatctttaccaacaagttgcacaatttcatttaggtcatcctcccttt 783
||||||| |||||||| || || |||||||| |||||||||||||||||||||||||| |
Sbjct: 301 tttcagccagagcatcctttccgacaagttgaacaatttcatttaggtcatcctccctct 242
Query: 784 gcagaacctcacgggcttttgtccttatg 812
|||| ||||||||||||||||||||||||
Sbjct: 241 gcagcacctcacgggcttttgtccttatg 213
Score = 149 bits (75), Expect = 1e-33
Identities = 105/115 (91%)
Strand = Plus / Minus
Query: 371 ttatcgagtttcatcctcaaggttgcggaaaccagcagtcaaatcatcatgaagcttctt 430
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 826 ttatcgagtctcatcctcaaggttgcggaaaccagcaaccaaatcatcatgaagcttctg 767
Query: 431 aaacttggctaccaaagcatcctctccttcggctggatcctcaaatttttgggac 485
||||||| | |||| | ||||||||||||| |||||||||||||| |||||||||
Sbjct: 766 aaacttgcccaccagaacatcctctccttcagctggatcctcaaacttttgggac 712
>LE_HBa0209K10_T7_371815
Length = 667
Score = 186 bits (94), Expect = 6e-45
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 484 acaccaaacggtagaataaatcccctaggcgatgcttaatgagagtgtaggtcatcttct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 acaccaaacggtagaataaatcccctaggcgatgcttaatgagagtgtaggtcatcttct 273
Query: 544 ggccatccataccagctcctcgttcaacggcctg 577
||||||||||||||||||||||||||||||||||
Sbjct: 274 ggccatccataccagctcctcgttcaacggcctg 307
Score = 127 bits (64), Expect = 5e-27
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 422 aagcttcttaaacttggctaccaaagcatcctctccttcggctggatcctcaaatttttg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 aagcttcttaaacttggctaccaaagcatcctctccttcggctggatcctcaaatttttg 66
Query: 482 ggac 485
||||
Sbjct: 67 ggac 70
Score = 119 bits (60), Expect = 1e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 574 cctggttggctaagttatagaaatggataatattccgtaacatccaaacagacttgtaga 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cctggttggctaagttatagaaatggataatattccgtaacatccaaacagacttgtaga 667
>SL2.40ch12
Length = 65486253
Score = 149 bits (75), Expect = 1e-33
Identities = 105/115 (91%)
Strand = Plus / Plus
Query: 371 ttatcgagtttcatcctcaaggttgcggaaaccagcagtcaaatcatcatgaagcttctt 430
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 47132031 ttatcgagtctcatcctcaaggttgcggaaaccagcaaccaaatcatcatgaagcttctg 47132090
Query: 431 aaacttggctaccaaagcatcctctccttcggctggatcctcaaatttttgggac 485
||||||| | |||| | ||||||||||||| |||||||||||||| |||||||||
Sbjct: 47132091 aaacttgcccaccagaacatcctctccttcagctggatcctcaaacttttgggac 47132145
Score = 115 bits (58), Expect = 2e-23
Identities = 94/106 (88%)
Strand = Plus / Plus
Query: 651 tacggagtaaatgcattttgtgcaaggtagtcctccctcaaaagctttgcagtttccaaa 710
||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 47132820 tacggcgtaaaagcattttgtgcaaggtagtcctcccttaaaagttttgcagtttccaag 47132879
Query: 711 gtgattttatctgtttcagctagagcatctttaccaacaagttgca 756
|| || |||||||||||||| |||||||| || || ||||| ||||
Sbjct: 47132880 gtaatcttatctgtttcagccagagcatcctttccgacaagctgca 47132925
Score = 107 bits (54), Expect = 5e-21
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 484 acaccaaacggtagaataaatcccctaggcgatgcttaatgagagtgtaggtcatcttct 543
|||||||||||||||| ||||| ||||| || ||||||||||||||||| || || || |
Sbjct: 47132316 acaccaaacggtagaacaaatctcctagacggtgcttaatgagagtgtaagtgatttttt 47132375
Query: 544 ggccatccataccagctcctcgttcaacggcctg 577
| |||||||||||||||||||| |||||||||||
Sbjct: 47132376 gtccatccataccagctcctcgctcaacggcctg 47132409
Score = 97.6 bits (49), Expect = 4e-18
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 756 acaatttcatttaggtcatcctccctttgcagaacctcacgggcttttgtccttatg 812
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 47134819 acaatttcatttaggtcatcctccctctgcagcacctcacgggcttttgtccttatg 47134875
Score = 75.8 bits (38), Expect = 2e-11
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 574 cctggttggctaagttatagaaatggataatattccgtaacatccaaacagacttgtaga 633
|||||||||| ||||||||||| ||||| || || || |||||||||||||| |||||||
Sbjct: 47132657 cctggttggccaagttatagaagtggatgatgttgcgcaacatccaaacagatttgtaga 47132716
Query: 634 aaggacagaa 643
|||| |||||
Sbjct: 47132717 aagggcagaa 47132726
Database: SGN Tomato Combined - WGS, BAC, and unigene sequences
Posted date: Apr 10, 2011 11:25 PM
Number of letters in database: 1,350,414,477
Number of sequences in database: 626,541
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 626541
Number of Hits to DB: 14,278,823
Number of extensions: 811714
Number of successful extensions: 57709
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 57709
Number of HSP's successfully gapped: 17
Length of query: 820
Length of database: 1,350,414,477
Length adjustment: 20
Effective length of query: 800
Effective length of database: 1,337,883,657
Effective search space: 1070306925600
Effective search space used: 1070306925600
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 13 (26.3 bits)
S2: 37 (73.8 bits)