# -*-Perl-*-
# $Id: fasta.t,v 1.1 2005/09/07 00:43:17 bosborne Exp $
# Before `make install' is performed this script should be runnable with
# `make test'. After `make install' it should work as `perl test.t'
use strict;
use vars qw($NUMTESTS);
BEGIN {
$NUMTESTS = 6;
# to handle systems with no installed Test module
# we include the t dir (where a copy of Test.pm is located)
# as a fallback
eval { require Test; };
if ( $@ ) {
use lib 't';
}
#
use Test;
plan tests => $NUMTESTS;
}
# There are many other tests of fasta I/O in t/, this
# is a dedicated script that could be further customized
my $verbose = $ENV{'BIOPERLDEBUG'};
ok(1);
my $io = Bio::SeqIO->new(-format => '',
-verbose => $verbose,
-file => Bio::Root::IO->catfile
(qw(t data test.fasta) ));
ok(my $seq = $io->next_seq);
ok($seq->length, 358);
ok($seq->display_id,'roa1_drome');
ok($seq->desc,'Rea guano receptor type III >> 0.1');
ok($seq->alphabet,'protein');