—package
Bio::Graphics::Glyph::lightning;
# A lightning bolt glyph to add some pizazz to your displays. Yeow!
use
strict;
sub
draw_component {
my
$self
=
shift
;
my
$gd
=
shift
;
my
$fg
=
$self
->fgcolor;
# find the center and vertices
my
(
$x1
,
$y1
,
$x2
,
$y2
) =
$self
->calculate_boundaries(
@_
);
my
$h
=
$self
->option(
'height'
);
my
$w
=
$h
*0.6;
my
$poly_pkg
=
$self
->polygon_package;
my
$polygon
=
$poly_pkg
->new();
# lightning bolt points up or down
if
(
$self
->option(
'orient'
) eq
'N'
) {
$y1
=
$y1
+
$h
/4;
$polygon
->addPt(
$x2
,
$y1
+(
$h
/2));
$polygon
->addPt(
$x2
-(
$w
*0.7),
$y1
+(
$h
/2));
$polygon
->addPt(
$x2
-(
$w
*0.2),
$y1
+(
$h
*0.15));
$polygon
->addPt(
$x2
-(
$w
*0.6),
$y1
+(
$h
*0.15));
$polygon
->addPt(
$x2
,
$y1
-
$h
/2);
$polygon
->addPt(
$x2
-(
$w
*0.1),
$y1
-(
$h
*0.05));
$polygon
->addPt(
$x2
+(
$w
*0.5),
$y1
-(
$h
*0.05));
$polygon
->addPt(
$x2
,
$y1
+(
$h
/2));
}
else
{
$y1
=
$y1
+
$h
/2;
$polygon
->addPt(
$x1
,
$y1
-(
$h
/2));
$polygon
->addPt(
$x1
+(
$w
*0.7),
$y1
-(
$h
/2));
$polygon
->addPt(
$x1
+(
$w
*0.2),
$y1
-(
$h
*0.15));
$polygon
->addPt(
$x1
+(
$w
*0.6),
$y1
-(
$h
*0.15));
$polygon
->addPt(
$x1
,
$y1
+
$h
/2);
$polygon
->addPt(
$x1
+(
$w
*0.1),
$y1
+(
$h
*0.05));
$polygon
->addPt(
$x1
-(
$w
*0.5),
$y1
+(
$h
*0.05));
$polygon
->addPt(
$x1
,
$y1
-(
$h
/2));
}
# Have to draw TWO polygons for fills in order to get an outline
# because filledPolygon in GD croaks with extra parameters (and
# doesn't support drawing of stroke anyways).
if
(
my
$c
=
$self
->bgcolor) {
$gd
->filledPolygon(
$polygon
,
$c
);
$gd
->polygon(
$polygon
,
$fg
);
}
else
{
$gd
->polygon(
$polygon
,
$fg
);
}
}
1;
__END__
=head1 NAME
Bio::Graphics::Glyph::lightning - The "lightning" glyph
=head1 SYNOPSIS
See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.
=head1 DESCRIPTION
This glyph draws a lightning bolt of specified height with relative
width, with the point of the lightning bolt centered on the
feature. The height of the bolt is specified by the "height"
option. Due to the complexity of this glyph, it doesn't resolve well
with heights less than 11 pixels.
This glyph was designed to indicate point mutations on a nucleotide or
protein backbone.
=head2 OPTIONS
The following options are standard among all Glyphs. See
L<Bio::Graphics::Glyph> for a full explanation.
Option Description Default
------ ----------- -------
-fgcolor Foreground color black
-outlinecolor Synonym for -fgcolor
-bgcolor Background color turquoise
-fillcolor Synonym for -bgcolor
-linewidth Line width 1
-height Height of glyph 10
-font Glyph font gdSmallFont
-connector Connector type 0 (false)
-connector_color
Connector color black
-label Whether to draw a label 0 (false)
-description Whether to draw a description 0 (false)
-hilite Highlight color undef (no color)
The following options are specific to this Glyph.
Option Description Default
------ ----------- -------
-orient direction of lightning bolt N
=head1 BUGS
No reported bugs.
=head1 SEE ALSO
L<Bio::Graphics::Panel>,
L<Bio::Graphics::Glyph>,
L<Bio::Graphics::Glyph::arrow>,
L<Bio::Graphics::Glyph::cds>,
L<Bio::Graphics::Glyph::crossbox>,
L<Bio::Graphics::Glyph::diamond>,
L<Bio::Graphics::Glyph::dna>,
L<Bio::Graphics::Glyph::dot>,
L<Bio::Graphics::Glyph::ellipse>,
L<Bio::Graphics::Glyph::extending_arrow>,
L<Bio::Graphics::Glyph::generic>,
L<Bio::Graphics::Glyph::graded_segments>,
L<Bio::Graphics::Glyph::heterogeneous_segments>,
L<Bio::Graphics::Glyph::line>,
L<Bio::Graphics::Glyph::pinsertion>,
L<Bio::Graphics::Glyph::primers>,
L<Bio::Graphics::Glyph::rndrect>,
L<Bio::Graphics::Glyph::segments>,
L<Bio::Graphics::Glyph::ruler_arrow>,
L<Bio::Graphics::Glyph::toomany>,
L<Bio::Graphics::Glyph::transcript>,
L<Bio::Graphics::Glyph::transcript2>,
L<Bio::Graphics::Glyph::translation>,
L<Bio::Graphics::Glyph::triangle>,
L<Bio::DB::GFF>,
L<Bio::SeqI>,
L<Bio::SeqFeatureI>,
L<Bio::Das>,
L<GD>
=head1 AUTHOR
Todd Harris E<lt>harris@cshl.orgE<gt>
Copyright (c) 2004 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
=cut