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TSIBLEY / App-RecordStream-Bio-0.21-TRIAL / t / data / fromsam-output-extra 

            

              
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{"rnext":"*","quals":[24,34,34,34,34,38,38,37,37,38,36,37,38,37,37,35,38,38,38,38,38,37,36,10,10,27,34,11,33,11,34,35,10,26,36,36,26,36,11,27,34,11,21,34,11,11,34,36,23,11,11,11,27,21,36,37,32,27,37,36,34,34,37,38,37,24,36,34,27,11,34,34,11,31,21,11,34,11,31,37,32,33,27,11,11,21,31,36,36,31,11,34,31,11,11,25,30,20,24,11,34,31,20,32,37,28,23,25,11,32,27,37,24,11,30,37,11,19,36,37,36,30,11,11,24,34,24,27,37,32,11,32,23,32,23,11,11,10,23,28,31,10,11,32,11,34,37,11,31,19,11,11,24,11,11,19,11,11,23,28,23,11,23,23,10,23,31,36,11,35,36,11,21,18,31,34,10,10,21,21,11,31,11,18,11,21,18,11,11,18,25,31,21,18,31,23,23,11,18,11,31,9,25,9,20,23,11,31,11,31,34,38,22,24,11,11,26,25,25,9,24,24,28,11,9,19,34,19,34,36,34,34,22,10,17,21,9,23,10,10,26,21,28,35,9,17,9,9,8,9,8,9,9,10,16,8,8,8,14,9,15,8,10,10,16,10,10,16,9,10,9,10,10,10,10,10,10,10,16,10,9,9,14,9,9,7,7,8,15,15,7,7,9,8,19,7,7,15,11,11,7],"pnext":"0","tlen":"0","qual":"9CCCCGGFFGEFGFFDGGGGGFE++<C,B,CD+;EE;E,<C,6C,,CE8,,,<6EFA<FECCFGF9EC<,CC,@6,C,@FAB<,,6@EE@,C@,,:?59,C@5AF=8:,A<F9,?F,4EFE?,,9C9<FA,A8A8,,+8=@+,A,CF,@4,,9,,4,,8=8,88+8@E,DE,63@C++66,@,3,63,,3:@63@88,3,@*:*58,@,@CG79,,;::*99=,*4C4CECC7+26*8++;6=D*2**)*)**+1)))/*0)++1++1*+*+++++++1+**/**(()00((*)4((0,,(","cigar":"70S98M133S","rname":"refname","tag":{"MD":{"type":"Z","value":"5A1A16A27A13T20A3A2A3"},"SA":{"type":"Z","value":"refname,5354,-,239S62M,60,5;"},"XS":{"value":"0","type":"i"},"RG":{"type":"Z","value":"1"},"AS":{"type":"i","value":"82"},"NM":{"type":"i","value":"8"}},"seq":"GCAAAGGTGGCTTTCTCTTTTTTGGTGTTTTTTATGTTGCTTGTGCCAAGTACTGTATAGATTTTAAAAAAATGTCACAATGTCAGCACAGTACCATGTACACATGGCATTAGGCCAGTAGTTTCAACTCAACTGCCGTTAAATGGCAGTCTAGCAGCAGACGAGGTATGAGAGCGACCCTTGCAGATCGGAAGAGCACACGTCTGAACTCCCTCTCGTATGCCGTCTTCTGCTTGCATACAAACAACCTCAATCACCTCACTATCACAGTTACATCTCTCATACCCTAGCCTCACCCCCT","flags":{"rc":"","r1":"","r2":"","paired":"","supplementary":"","secondary":"","duplicate":"","unmapped":"","mate_rc":"","qc_failed":"","proper_pair":"","mate_unmapped":""},"pos":"6866","qname":"M00745:157:000000000-AFFYM:1:1101:11308:1175","mapq":"60","flag":0}
{"pnext":"0","quals":[34,34,36,37,27,32,37,36,21,27,11,11,11,23,36,34,11,11,34,21,11,34,27,11,36,26,36,36,26,10,35,34,11,33,11,34,27,10,10,36,37,38,38,38,38,38,35,37,37,38,37,36,38,37,37,38,38,34,34,34,34,24],"rnext":"*","tlen":"0","tag":{"MD":{"type":"Z","value":"4C15T4G3T2C29"},"SA":{"type":"Z","value":"refname,6866,+,70S98M133S,60,8;"},"XS":{"value":"0","type":"i"},"NM":{"type":"i","value":"5"},"RG":{"type":"Z","value":"1"},"AS":{"type":"i","value":"52"}},"rname":"refname","qual":"CCEF<AFE6<,,,8EC,,C6,C<,E;EE;+DC,B,C<++EFGGGGGDFFGFEGFFGGCCCC9","cigar":"239H62M","mapq":"60","qname":"M00745:157:000000000-AFFYM:1:1101:11308:1175","seq":"ATCTATACAGTACTTGGCACAAGCAACATAAAAAACACCAAAAAAGAGAAAGCCACCTTTGC","pos":"5354","flags":{"proper_pair":"","mate_unmapped":"","qc_failed":"","mate_rc":"","paired":"","supplementary":"1","secondary":"","unmapped":"","duplicate":"","r1":"","r2":"","rc":"1"},"flag":"2064"}
{"pnext":"0","quals":[38,38,37,37,38,37,35,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,37,38,38,38,38,38,38,38,38,38,38,38,38,38,34,34,34,34,34],"rnext":"*","tlen":"0","tag":{"MD":{"type":"Z","value":"7G34G19"},"XS":{"value":"0","type":"i"},"RG":{"value":"1","type":"Z"},"NM":{"type":"i","value":"2"},"AS":{"type":"i","value":"58"}},"cigar":"62M","qual":"GGFFGFDGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGCCCCC","rname":"refname","flag":"16","mapq":"60","qname":"M00745:157:000000000-AFFYM:1:1101:16285:1180","seq":"TTGCCTTAAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTAACTCTGGTAACTAGAGATC","pos":"417","flags":{"qc_failed":"","mate_rc":"","proper_pair":"","mate_unmapped":"","r1":"","r2":"","rc":"1","secondary":"","supplementary":"","paired":"","duplicate":"","unmapped":""}}
{"tlen":"0","pnext":"0","rnext":"*","quals":[34,34,34,34,34,38,35,38,38,38,38,37,38,37,38,38,35,36,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,37,38,38,35,37,37,38,38,37,36,38,37,38,38,38,38,38,27,35,35,37,37,34,36,38,35,38,38,38,38,38,38,38,37,38,36,37,37,38,38,38,38,38,38,35,33,37,37,38,38,38,38,32,37,37,37,38,38,38,38,38,38,37,38,38,38,38,37,38,38,38,37,30,36,38,36,37,23,37,37,38,37,37,36,38,34,31,23,35,38,37,38,37,37,33,36,37,38,38,38,38,38,36,38,38,38,38,38],"flag":0,"mapq":"0","qname":"M00745:157:000000000-AFFYM:1:1101:18031:1214","flags":{"mate_rc":"","qc_failed":"","mate_unmapped":"","proper_pair":"","rc":"","r2":"","r1":"","unmapped":"","duplicate":"","supplementary":"","paired":"","secondary":""},"seq":"ACAACTGCTTGTTACACCCTATGAGCCAGCATGGGATAAATAACCCAGAAAGAGAAGTGCTAATGTAAAAGTTTGACAGCCACCTAGCATTTCATCACATGGCCCAAGAGAAGCATCCGGAGTACTTCAAGGACTGCTAACACT","pos":"75","tag":{"XA":{"type":"Z","value":"refname,+9189,144M,8;"},"MD":{"type":"Z","value":"37G0G2G24G0G13G23G32G5"},"RG":{"value":"1","type":"Z"},"AS":{"type":"i","value":"128"},"NM":{"value":"8","type":"i"},"XS":{"value":"128","type":"i"}},"qual":"CCCCCGDGGGGFGFGGDEGGGGGGGGGGGGGGGGGGFGGDFFGGFEGFGGGGG<DDFFCEGDGGGGGGGFGEFFGGGGGGDBFFGGGGAFFFGGGGGGFGGGGFGGGF?EGEF8FFGFFEGC@8DGFGFFBEFGGGGGEGGGGG","cigar":"144M","rname":"refname"}
{"tlen":"0","rnext":"*","quals":[34,34,27,27,33,37,27,31,24,31,36,37,38,27,11,37,37,23,37,32,37,34,38,31,32,36,37,37,35,37,37,34,11,27,11,34,36,32,34,37,37,23,27,37,24,34,37,23,26,21,36,38,34,31,34,36,36,34,37,38,38,35,35,23,37,23,21,27,37,34,24,23,31,11,11,11,11,11,11,25,27,37,32,37,23,37,37,38,11,19,27,11,10,34,34,31,36,37,19,11,36,11,11,31,37,11,32,36,36,37,38,23,19,32,11,32,36,37,36,24,11,11,20,10,24,32,37,23,34,10,31,10,31,10,31,34,34,23,11,32,32,36,37,27,37,24,28,11,19,11,32,31,26,11,24,24,23,37,28,35,11,11,11,10,18,18,11,29,11,31,11,11,23,11,18,11,11],"pnext":"0","pos":"0","seq":"GCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCCCTGCCTCAGCCTCCCAAAGTGCTGGGACTCCAGGCATGAGCAACCGCGCCTGGCCCCTGTCCTCCAGTTCTAACCACTCGAGCCCCCCTCTCAGTGGTATAAAGTCCTGCTGACAGGGAAGTGCAGCAAC","flags":{"secondary":"","supplementary":"","paired":"","duplicate":"","unmapped":"1","rc":"","r1":"","r2":"","proper_pair":"","mate_unmapped":"","mate_rc":"","qc_failed":""},"qname":"M00745:157:000000000-AFFYM:1:1101:22417:1221","mapq":"0","flag":"4","qual":"CC<<BF<@9@EFG<,FF8FAFCG@AEFFDFFC,<,CEACFF8<F9CF8;6EGC@CEECFGGDD8F86<FC98@,,,,,,:<FAF8FFG,4<,+CC@EF4,E,,@F,AEEFG84A,AEFE9,,5+9AF8C+@+@+@CC8,AAEF<F9=,4,A@;,998F=D,,,+33,>,@,,8,3,,","rname":"*","cigar":"*","tag":{"AS":{"value":"0","type":"i"},"RG":{"type":"Z","value":"1"},"XS":{"value":"0","type":"i"}}}
{"tag":{"XA":{"type":"Z","value":"refname,+9300,7M1D2M1D1M1D2M2D104M,13;"},"MD":{"type":"Z","value":"0A0G1A3^G2^G1^A2^TC10G19G11G39A14G6"},"AS":{"value":"94","type":"i"},"RG":{"type":"Z","value":"1"},"NM":{"type":"i","value":"13"},"XS":{"type":"i","value":"94"}},"rname":"refname","cigar":"7M1D2M1D1M1D2M2D104M","qual":"CCCCCGGDGGGGGFF<9FG,FDGGGGGCFG8FFFFFDGACCC,CAFFFDGE7FGGCCFEFFCEFGFF<7,,:6C,,B@FF?,,9++7FF@C7::+444+@FC7>:FFDFFAFD,D,","flag":0,"qname":"M00745:157:000000000-AFFYM:1:1101:22803:1228","mapq":"0","pos":"186","flags":{"mate_rc":"","qc_failed":"","proper_pair":"","mate_unmapped":"","rc":"","r1":"","r2":"","paired":"","supplementary":"","secondary":"","unmapped":"","duplicate":""},"seq":"CTCTTCCGATCTAAGGACTGCTAACACTGAGCTTCTTACAAGAGACTTTCCGCTAGGGACTTTCCAGGGAGGTGTGGCCTGGGCGGGACCGGGGCGTGGCGAGCCCTCAAATGCTG","pnext":"0","rnext":"*","quals":[34,34,34,34,34,38,38,35,38,38,38,38,38,37,37,27,24,37,38,11,37,35,38,38,38,38,38,34,37,38,23,37,37,37,37,37,35,38,32,34,34,34,11,34,32,37,37,37,35,38,36,22,37,38,38,34,34,37,36,37,37,34,36,37,38,37,37,27,22,11,11,25,21,34,11,11,33,31,37,37,30,11,11,24,10,10,22,37,37,31,34,22,25,25,10,19,19,19,10,31,37,34,22,29,25,37,37,35,37,37,32,37,35,11,35,11],"tlen":"0"}
{"tag":{"AS":{"type":"i","value":"0"},"RG":{"value":"1","type":"Z"},"XS":{"value":"0","type":"i"}},"qual":"CCCCCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGDGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAFGGGGGGGGGGGFGGGGGGGGGFGGGGGGGGGGGGEGGFFGGGGGGGGGGFDGGGFGGGGFGGGGGGGGDEFFGGGFGGFGFAEGGGDGGGFGGFGGGEFGGGGGGFGGGGGGGGGGGFDEGG8DFGGGGG>=EFFGGGEGFGGCE?FGGFGEC7CFCF7DD=CF>C>CFF8E","rname":"*","cigar":"*","mapq":"0","qname":"M00745:157:000000000-AFFYM:1:1101:11495:1287","seq":"CATGCACAGCTGTGGCTGATCATGTGCTCTACTGGGAGGGGTCACCCTGGTAATTCATATTGCCAGCTTCAAAGTTAAGGGGCAAACGTGTTGGGATTCTTGGCCCACATATCTAGTTATAGAGAATAAGATCATTGAAAGTTTTACAGAAATTGTTGGGAATGTGTAGAAAGTTTCAGGGCTACTGACTTTCCTCTAAGGAGGAAATCAATTCGGCATATAATCCACTGATATGAAAACATCTGT","pos":"0","flags":{"qc_failed":"","mate_rc":"","proper_pair":"","mate_unmapped":"","r1":"","r2":"","rc":"","paired":"","supplementary":"","secondary":"","duplicate":"","unmapped":"1"},"flag":"4","pnext":"0","rnext":"*","quals":[34,34,34,34,34,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,35,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,38,32,37,38,38,38,38,38,38,38,38,38,38,38,37,38,38,38,38,38,38,38,38,38,37,38,38,38,38,38,38,38,38,38,38,38,38,36,38,38,37,37,38,38,38,38,38,38,38,38,38,38,37,35,38,38,38,37,38,38,38,38,37,38,38,38,38,38,38,38,38,35,36,37,37,38,38,38,37,38,38,37,38,37,32,36,38,38,38,35,38,38,38,37,38,38,37,38,38,38,36,37,38,38,38,38,38,38,37,38,38,38,38,38,38,38,38,38,38,38,37,35,36,38,38,23,35,37,38,38,38,38,38,29,28,36,37,37,38,38,38,36,38,37,38,38,34,36,30,37,38,38,37,38,36,34,22,34,37,34,37,22,35,35,28,34,37,29,34,29,34,37,37,23,36],"tlen":"0"}