NAME

fqlen.pl - A demo implementation to filter fastx files by length

VERSION

version 1.12.0

SYNOPSIS

  fqc [options] [FILE1 FILE2 FILE3...]

DESCRIPTION

A program to filter sequences by minimum/maximum lengths. Can process multiple files and rename the produced sequences.

PARAMETERS

FILE NAME

-a, --abspath

Print the absolute path of the filename (the absolute path is always the table key, but if relative paths are supplied, they will be printed).

-m, --min INT

Minimum length to print a sequence

-x, --max INT

Maximum length to print a sequence

-l, --len

Add read length as comment

-f, --fasta

Force FASTA output (default: as INPUT)

-w, --fasta-width INT

Paginate FASTA sequences (default: no)

-n, --namescheme

Sequence name scheme:

-p, --prefix STR

Use as sequence name prefix this string

-c, --strip-comment

Remove sequence comment (default: no)

--verbose

Add verbose feedback on % of printed reads

AUTHOR

Andrea Telatin <andrea@telatin.com>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2019 by Andrea Telatin.

This is free software, licensed under:

  The MIT (X11) License