NAME

Bio::MLST::SearchForFiles - Take in a species name and get the allele and profile files.

VERSION

version 1.150910

SYNOPSIS

Take in a species name and get the allele and profile files.

   use Bio::MLST::SearchForFiles;
   
   my $search_results = Bio::MLST::SearchForFiles->new(
     species_name => 'coli',
     base_directory => '/path/to/mlst/data'
   );
   $search_results->allele_filenames();
   $search_results->profiles_filename();

METHODS

allele_filenames

Return the path to the allele files

profiles_filename

Return the path to the profile file

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2012 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007