NAME

Bio::DB::SQL::DBAdapter - Object representing an instance of a bioperl database

SYNOPSIS

    $db = Bio::DB::SQL::DBAdaptor->new(
        -user   => 'root',
        -dbname => 'pog',
        -host   => 'caldy',
        -driver => 'mysql',
        );

DESCRIPTION

This object represents a database that is implemented somehow (you shouldn\'t care much as long as you can get the object). From the object you can pull out other adapters, such as the BioSeqAdapter,

CONTACT

Describe contact details here

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

prepare

 Title   : prepare
 Usage   : $sth = $dbobj->prepare("select seq_start,seq_end from feature where analysis = \" \" ");
 Function: prepares a SQL statement on the DBI handle
 Example :
 Returns : A DBI statement handle object
 Args    : a SQL string

get_PrimarySeqAdaptor

 Title   : get_PrimarySeqAdaptor
 Usage   :
 Function:
 Example :
 Returns : 
 Args    :

get_SeqAdaptor

 Title   : get_SeqAdaptor
 Usage   :
 Function:
 Example :
 Returns : 
 Args    :

get_BioDatabaseAdaptor

 Title   : get_BioDatabaseAdaptor
 Usage   :
 Function:
 Example :
 Returns : 
 Args    :

get_SeqFeatureKeyAdaptor

 Title   : get_SeqFeatureKeyAdaptor
 Usage   :
 Function:
 Example :
 Returns : 
 Args    :

get_SeqFeatureKeyAdaptor

 Title   : get_SeqFeatureKeyAdaptor
 Usage   :
 Function:
 Example :
 Returns : 
 Args    :

get_SeqFeatureSourceAdaptor

 Title   : get_SeqFeatureSourceAdaptor
 Usage   :
 Function:
 Example :
 Returns : 
 Args    :

get_SeqLocationAdaptor

 Title   : get_SeqLocationAdaptor
 Usage   :
 Function:
 Example :
 Returns : 
 Args    :

get_SeqLocationAdaptor

 Title   : get_SeqLocationAdaptor
 Usage   :
 Function:
 Example :
 Returns : 
 Args    :

get_CommentAdaptor

 Title   : get_CommentAdaptor
 Usage   :
 Function:
 Example :
 Returns : 
 Args    :

get_ReferenceAdaptor

 Title   : get_ReferenceAdaptor
 Usage   :
 Function:
 Example :
 Returns : 
 Args    :

get_DBLinkAdaptor

 Title   : get_DBLinkAdaptor
 Usage   :
 Function:
 Example :
 Returns : 
 Args    :

get_SpeciesAdaptor

 Title   : get_SpeciesAdaptor
 Usage   :
 Function:
 Example :
 Returns : 
 Args    :

_db_handle

 Title   : _db_handle
 Usage   : $obj->_db_handle($newval)
 Function: 
 Example : 
 Returns : value of _db_handle
 Args    : newvalue (optional)

DESTROY

 Title   : DESTROY
 Usage   :
 Function:
 Example :
 Returns : 
 Args    :

cpanm Bio::DB::Seq

perl -MCPAN -e shell
install Bio::DB::Seq