NAME

Bio::Tools::Run::PiseApplication::golden

SYNOPSIS

  #

DESCRIPTION

Bio::Tools::Run::PiseApplication::golden

      Bioperl class for:

        GOLDEN  fetch a database entry (N. Joly)


      Parameters: 

        (see also:
          http://bioweb.pasteur.fr/seqanal/interfaces/golden.html 
         for available values):


                golden (String)

                db (Excl)
                        Database

                query (String)
                        query (Entry name or Accesion number)

                ac (Switch)
                        Search with Accession number only (except nrl3d) (-a)

                id (Switch)
                        Search with entry name only (-i)

                outfile (OutFile)
                        pipe: seqfile

                convert (Switch)
                        Change output format

                seqformat (Excl)
                        Output Format

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org              - General discussion
  http://bioperl.org/MailList.shtml  - About the mailing lists

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:

  bioperl-bugs@bioperl.org
  http://bioperl.org/bioperl-bugs/

AUTHOR

Catherine Letondal (letondal@pasteur.fr)

COPYRIGHT

Copyright (C) 2003 Institut Pasteur & Catherine Letondal. All Rights Reserved.

This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

DISCLAIMER

This software is provided "as is" without warranty of any kind.

SEE ALSO

• http://bioweb.pasteur.fr/seqanal/interfaces/golden.html

• Bio::Tools::Run::PiseApplication

• Bio::Tools::Run::AnalysisFactory::Pise

• Bio::Tools::Run::PiseJob

new

 Title   : new()
 Usage   : my $golden = Bio::Tools::Run::PiseApplication::golden->new($location, $email, @params);
 Function: Creates a Bio::Tools::Run::PiseApplication::golden object.
           This method should not be used directly, but rather by 
           a Bio::Tools::Run::AnalysisFactory::Pise instance.
           my $factory = Bio::Tools::Run::AnalysisFactory::Pise->new();
           my $golden = $factory->program('golden');
 Example : -
 Returns : An instance of Bio::Tools::Run::PiseApplication::golden.