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Bio-PopGen-1.7.3
River stage zero No dependents
++

Changes for version 1.7.3 - 2018-09-11

  • First release after split from bioperl-live.

Documentation

bp_composite_LD
bp_heterogeneity_test
a test for distinguishing between selection and population expansion.

Modules

Bio::PopGen::Genotype
An implementation of GenotypeI which is just an allele container
Bio::PopGen::GenotypeI
A marker and alleles for a specific individual
Bio::PopGen::HtSNP
Bio::PopGen::IO
Input individual,marker,allele information
Bio::PopGen::IO::csv
Bio::PopGen::IO::hapmap
A parser for HapMap output data
Bio::PopGen::IO::phase
A parser for Phase format data
Bio::PopGen::IO::prettybase
Extract individual allele data from PrettyBase format
Bio::PopGen::Individual
An implementation of an Individual who has Genotype or Sequence Results
Bio::PopGen::IndividualI
An individual who has Genotype or Sequence Results
Bio::PopGen::Marker
A genetic marker which one uses to generate genotypes
Bio::PopGen::MarkerI
A Population Genetic conceptual marker
Bio::PopGen::PopStats
A collection of methods for calculating statistics about a population or sets of populations
Bio::PopGen::Population
A population of individuals
Bio::PopGen::PopulationI
Interface for Populations
Bio::PopGen::Simulation::Coalescent
A Coalescent simulation factory
Bio::PopGen::Simulation::GeneticDrift
A simple genetic drift simulation
Bio::PopGen::Statistics
Population Genetics statistical tests
Bio::PopGen::TagHaplotype
Haplotype tag object.
Bio::PopGen::Utilities
Utilities for working with PopGen data and objects
Bio::Tree::AlleleNode
A Node with Alleles attached

Examples

Other files