NAME

XMS::MotifSet - Perl module for creating XMS Motifset from a given array of motifs

SYNOPSIS

  use XMS::MotifSet;

  my $motifset = XMS::MotifSet->new(@motif);   # @motif is an array of motifs
  $motifset->toXML();       # Creating motifset in xms format
  $motifset->toString();    # Creatin motifset in string format
  

DESCRIPTION

The XMS::MotifSet package is used to create motifset in XMS and string format from a given array of motifs.

METHODS XMS::MotifSet provides three methods, new(), toXML() and toString():

$m = XMS::MotifSet-new([array]);>

new() returns a new String handle.

$x = $m-toXML();>

toXML() converts an array of motifs into a XMS format motifset.

= item $s = $m-toString();>

toString() converts an array of motifs into a string motifset.

DEPENDENCIES

This module has external dependencies on the following modules: Exporter XML::Writer, IO::File XML::DOM XMS::Motif XMS::WeightMatrix

EXPORT

Nothing

SEE ALSO perl(1), XML::Writer, XML::DOM, XMS::WeightMatrix, XMS::Motif

AUTHOR

Harpreet Saini, hsaini@ebi.ac.uk

COPYRIGHT AND LICENSE

Copyright (C) 2009 by harpreet saini

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.9 or, at your option, any later version of Perl 5 you may have available.