MyShortRead::ChromBed - A perl class to deal with single chromosome BED file.
use MyShortRead::ChromBed; my $chrBed = new MyShortRead::ChromBed;
This class is used to represent and perform operations on single chromosome BED file. After the object has been created, it can bin the genome and return a count vector. Then it can also calculate sliding window counts based on the bin count vector. Before the object dies, you should call member function to delete the BED file.
This is an object-oriented module.
MyShortRead::MyShortRead MyShortRead::SRBed
Mailing list: https://groups.google.com/forum/#!forum/diffreps-discuss
Web site: https://code.google.com/p/diffreps/
Li Shen, <shenli.sam@gmail.com>
Copyright (C) 2010-2013 by Li Shen
diffReps goes under GNU GPL v3: http://www.gnu.org/licenses/gpl.html
To install PJ::Genome, copy and paste the appropriate command in to your terminal.
cpanm
cpanm PJ::Genome
CPAN shell
perl -MCPAN -e shell install PJ::Genome
For more information on module installation, please visit the detailed CPAN module installation guide.