NAME

Bio::PhyloTastic::PruneOMatic - Prunes a megatree down to size

SYNOPSIS

 phylotastic PruneOMatic -i <infile> -t <taxa> -o <outfile>

DESCRIPTION

This module prunes an input tree down to a specified set of taxa.

OPTIONS AND ARGUMENTS

-i infile

An input file. Required. Default is an adjacency table.

-o outfile

An output file name. If '-', prints output to STDOUT. Required.

-t taxa

A file with a list of taxa names to retain, one name per line. Required.

-d informat

An input format, e.g. NEXUS, Newick, NeXML, PhyloXML, TaxList. Optional. Default is adjacency table.

-s outformat

An output format, e.g. NeXML, TaxList. Optional. Default is adjacency table.