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all_entities_Reagent

Return all instances of the Reagent entity.

This entity represents a compound as it is used by a specific reaction. A reaction involves many compounds, and a compound can be involved in many reactions. The reagent describes the use of the compound by a specific reaction.

Example:

    all_entities_Reagent -a 

would retrieve all entities of type Reagent and include all fields in the entities in the output.

The Reagent entity has the following relationship links:

HasDefaultLocation Compartment
IsInvolvedIn Reaction
IsParticipationOf Compound

Command-Line Options

-a

Return all fields.

-h

Display a list of the fields available for use.

-fields field-list

Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:

stoichiometry
cofactor
compartment_index
transport_coefficient

Output Format

The standard output is a tab-delimited file. It consists of the input file with an extra column added for each requested field. Input lines that cannot be extended are written to stderr.