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Bio-KBase-0.06
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/ er_scripts/query_entity_Experiment

query_entity_Experiment

Query the entity Experiment.

An experiment is a combination of conditions for which gene expression information is desired. The result of the experiment is a set of expression levels for features under the given conditions.

Example:

    query_entity_Experiment -a

The Experiment entity has the following relationship links:

AffectsLevelOf AtomicRegulon
HasResultsFor ProbeSet
HasValueFor Attribute
IndicatesSignalFor Feature
OperatesIn Media

Command-Line Options

-is field,value

Limit the results to entities where the given field has the given value.

-like field,value

Limit the results to entities where the given field is LIKE (in the sql sense) the given value.

-op operator,field,value

Limit the results to entities where the given field is related to the given value based on the given operator.

The operators supported are as follows. We provide text based alternatives to the comparison operators so that extra quoting is not required to keep the command-line shell from confusing them with shell I/O redirection operators.

< or lt
> or gt
<= or le
>= or ge
=
LIKE
-a

Return all fields.

-h

Display a list of the fields available for use.

-fields field-list

Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:

source

Output Format

The standard output is a tab-delimited file containing a column for each requested field.