Given a set of KBase identifiers, look up the associated external identifiers.
Example:
kbase_ids_to_external_ids < input > output
The standard input should be a tab-separated table (i.e., each line is a tab-separated set of fields). Normally, the last field in each line would contain the identifer. If another column contains the identifier use
-c N
where N is the column (from 1) that contains the identifier.
This is a pipe command. The input is taken from the standard input, and the output is to the standard output.
This is used only if the column containing the identifier is not the last column.
Read data from InputFile instead of from the standard input.
The standard output is a tab-delimited file. It consists of the input file with extra columns added.
Input lines that cannot be extended are written to stderr.
To install Bio::KBase, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::KBase
CPAN shell
perl -MCPAN -e shell install Bio::KBase
For more information on module installation, please visit the detailed CPAN module installation guide.