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Finnigan-0.0206d
River stage zero No dependents
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  • 12 May 2012 00:17:37 UTC
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Changes for version 0.0206

  • added support for v.60 (Orbitrap Velos)
  • added precursor intensity search to Finnigan::Scan::CentroidList
  • proper handling of empty scans

Documentation

mzxml-unpack
decode the base64-encoded scan data in an mzXML or mzML file
mzxml-unpack
decode the base64-encoded scan data in an mzXML or mzML file
uf-casinfo
decode the CASInfo structure in a Finnigan raw file
uf-error
print the error log entries from a Finnigan raw file
uf-header
decode the file header in a Finnigan raw file
uf-index
examine the ScanIndexEntry structures in a Finnigan raw file
uf-instrument
print or dump the instrument IDs found a Finnigan raw file
uf-log
list or dump the instrument log entries in a Finnigan raw file
uf-meth
decode the embedded method file in a Finnigan raw file
uf-mzml
convert a Finnigan raw file to mzML
uf-mzxml
convert a Finnigan raw file to mzXML
uf-params
list or dump the ScanParameters records in a Finnigan raw file
uf-rfi
decode the RawFileInfo structure in a Finnigan raw file
uf-runheader
decode the RunHeader structure in a Finnigan raw file
uf-scan
examine scan data in a single MS scan
uf-scan-light
list the profile or centroids in a single MS scan
uf-segments
dump the scan event hirerarchy of a Finnigan raw file
uf-seqrow
decode the SeqRow structure in a Finnigan raw file
uf-trailer
examine the ScanEvent structures in a Finnigan raw file "trailer"
uf-tune
list or dump the instrument settings and calibration data from a Finnigan raw file

Modules

Finnigan
Thermo/Finnigan mass spec data decoder
Finnigan::AuditTag
a decoder for AuditTag, a substructure found in the Finnigan file headers
Finnigan::CASInfo
a decoder for autosampler data
Finnigan::CASInfoPreamble
a decoder for CASInfoPreamble, a numeric autosampler descriptor
Finnigan::Decoder
a generic binary structure decoder
Finnigan::Error
a decoder for Error, an error log record
Finnigan::FileHeader
a decoder for Finnigan file headers
Finnigan::FractionCollector
a decoder for FractionCollector, a mass range object in ScanEvent
Finnigan::GenericDataDescriptor
a decoder for GenericDataDescriptor, a key to decoding GenericRecord fields
Finnigan::GenericDataHeader
a decoder for GenericDataHeader -- a key to decoding generic data records
Finnigan::GenericRecord
a decoder for data structures defined by GenericDataHeader
Finnigan::InjectionData
a decoder for the injection parameters in a sequence table row
Finnigan::InstID
a decoder for InstID, a set of instrument identifiers
Finnigan::InstrumentLogRecord
a decoder for a single Instrument Log record
Finnigan::MethodFile
a decoder for the outer MethodFile container
Finnigan::OLE2DIF
a decoder for Double-Indirect FAT, a block allocation structure in Microsoft OLE2
Finnigan::OLE2DirectoryEntry
a decoder for the Microsoft OLE2 directory entry
Finnigan::OLE2FAT
a decoder for FAT Sector, a block allocation structure in OLE2
Finnigan::OLE2File
a decoder for Microsoft structured data files (OLE2 a.k.a. CDF)
Finnigan::OLE2Header
a decoder for the Microsoft OLE2 header structure
Finnigan::OLE2Property
a decoder for the Property structure in Microsoft OLE2
Finnigan::PacketHeader
a decoder for PacketHeader, a substructure of ScanDataPaket
Finnigan::Peak
a full-featured decoder for a single (M/z, abundance) pair, an element of the PeakList structure
Finnigan::Peaks
a decoder for PeaksList, the list of peak centroids
Finnigan::Profile
a full-featured decoder for Finnigan scan profiles
Finnigan::ProfileChunk
a full-featured decoder for a single ProfileChunk structure
Finnigan::RawFileInfo
a decoder for RawFileInfo, the primary index structure
Finnigan::RawFileInfoPreamble
a decoder for RawFileInfoPreamble, the binary data part of RawFileInfo
Finnigan::Reaction
a decoder for Reaction, the container for precursor mass and fragmentation energy
Finnigan::RunHeader
a decoder for RunHeader, the primary file index structure
Finnigan::SampleInfo
a decoder for SampleInfo, the primary file index structure
Finnigan::Scan
a lightweight scan data decoder
Finnigan::ScanEvent
a decoder for ScanEvent, a detailed scan descriptor
Finnigan::ScanEventPreamble
a decoder for ScanEventPreamble, the byte array component of ScanEvent
Finnigan::ScanEventTemplate
a decoder for ScanEventTemplate, the prototype scan descriptor
Finnigan::ScanIndexEntry
a decoder for ScanIndexEntry, a linked list element pointing to scan data
Finnigan::ScanParameters
a decoder for ScanParameters, a GenericRecord containing various scan meta-data.
Finnigan::SeqRow
a decoder for one row of the sequencer table

Provides

Finnigan::Scan::CentroidList
in lib/Finnigan/Scan.pm
Finnigan::Scan::Profile
in lib/Finnigan/Scan.pm
Finnigan::Scan::ProfileChunk
in lib/Finnigan/Scan.pm

Other files