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12 May 2012 00:17:37 UTC
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Gene Selkov
Changes for version 0.0206
- added support for v.60 (Orbitrap Velos)
- added precursor intensity search to Finnigan::Scan::CentroidList
- proper handling of empty scans
Documentation
decode the base64-encoded scan data in an mzXML or mzML filedecode the base64-encoded scan data in an mzXML or mzML filedecode the CASInfo structure in a Finnigan raw fileprint the error log entries from a Finnigan raw filedecode the file header in a Finnigan raw fileexamine the ScanIndexEntry structures in a Finnigan raw fileprint or dump the instrument IDs found a Finnigan raw filelist or dump the instrument log entries in a Finnigan raw filedecode the embedded method file in a Finnigan raw fileconvert a Finnigan raw file to mzMLconvert a Finnigan raw file to mzXMLlist or dump the ScanParameters records in a Finnigan raw filedecode the RawFileInfo structure in a Finnigan raw filedecode the RunHeader structure in a Finnigan raw fileexamine scan data in a single MS scanlist the profile or centroids in a single MS scandump the scan event hirerarchy of a Finnigan raw filedecode the SeqRow structure in a Finnigan raw fileexamine the ScanEvent structures in a Finnigan raw file "trailer"list or dump the instrument settings and calibration data from a Finnigan raw fileModules
Thermo/Finnigan mass spec data decodera decoder for AuditTag, a substructure found in the Finnigan file headersa decoder for autosampler dataa decoder for CASInfoPreamble, a numeric autosampler descriptora generic binary structure decodera decoder for Error, an error log recorda decoder for Finnigan file headersa decoder for FractionCollector, a mass range object in ScanEventa decoder for GenericDataDescriptor, a key to decoding GenericRecord fieldsa decoder for GenericDataHeader -- a key to decoding generic data recordsa decoder for data structures defined by GenericDataHeadera decoder for the injection parameters in a sequence table rowa decoder for InstID, a set of instrument identifiersa decoder for a single Instrument Log recorda decoder for the outer MethodFile containera decoder for Double-Indirect FAT, a block allocation structure in Microsoft OLE2a decoder for the Microsoft OLE2 directory entrya decoder for FAT Sector, a block allocation structure in OLE2a decoder for Microsoft structured data files (OLE2 a.k.a. CDF)a decoder for the Microsoft OLE2 header structurea decoder for the Property structure in Microsoft OLE2a decoder for PacketHeader, a substructure of ScanDataPaketa full-featured decoder for a single (M/z, abundance) pair, an element of the PeakList structurea decoder for PeaksList, the list of peak centroidsa full-featured decoder for Finnigan scan profilesa full-featured decoder for a single ProfileChunk structurea decoder for RawFileInfo, the primary index structurea decoder for RawFileInfoPreamble, the binary data part of RawFileInfoa decoder for Reaction, the container for precursor mass and fragmentation energya decoder for RunHeader, the primary file index structurea decoder for SampleInfo, the primary file index structurea lightweight scan data decodera decoder for ScanEvent, a detailed scan descriptora decoder for ScanEventPreamble, the byte array component of ScanEventa decoder for ScanEventTemplate, the prototype scan descriptora decoder for ScanIndexEntry, a linked list element pointing to scan dataa decoder for ScanParameters, a GenericRecord containing various scan meta-data.a decoder for one row of the sequencer tableProvides
in lib/Finnigan/Scan.pmin lib/Finnigan/Scan.pmin lib/Finnigan/Scan.pmOther files
Module Install Instructions
To install Finnigan, copy and paste the appropriate command in to your terminal.
cpanm Finnigan
perl -MCPAN -e shell install Finnigan
For more information on module installation, please visit the detailed CPAN module installation guide.