Changes for version 0.86

  • Constrain the p-value to not be more than 1, which sometimes happens due to rounding errors on some platforms.

Modules

abstract base class defining interface for how Annotation information should be provided
parses a gene annotation file
provides information about a node in the Gene Ontology
abstract base class providing API for the provision on Gene Ontology information
Provides API for retrieving data from Gene Ontology obo file.
Provides API for retrieving data from Gene Ontology files
identify GO nodes that annotate a group of genes with a significant p-value
prints an html table of the results of GO::TermFinder
prints results of GO::TermFinder as a text report
simply utility module for dealing with file parsing
provides some general utilities for clients of other GO classes
Creates a gif or png image for visualizing the GO DAG
a helper class for GO::View to deal with the image

Provides

in lib/GO/TermFinder/Native.pm
in lib/GO/TermFinder/Native.pm
in lib/GO/TermFinder/Native.pm