Author image Joshua Orvis
and 1 contributors

Documentation

creates an htab file from hmmscan or hmmpfam raw input depending on the version of hmmer passed using HmmTools.pm

Modules

module for validating FASTA format records
TIGR::FASTA::Iterator class for parsing and navigating FASTA format files and streams. An object of this class can parse FASTA records from STDIN and from a pipe.
TIGR::FASTA::Reader class for parsing and navigating FASTA format files.
TIGR::FASTA::Record class describing FASTA records
TIGR::FASTA::Writer class for writing TIGR::FASTA::Record objects to a file
TIGR Foundation object
Functions for processing files from HMMer

Provides

in Provides.pm.PL