TIGR-0.03 - Legacy classes/scripts from TIGR for HMM and FASTA parsing

Documentation

creates an htab file from hmmscan or hmmpfam raw input depending on the version of hmmer passed using HmmTools.pm

Modules

TIGR::FASTA::Grammar

module for validating FASTA format records

TIGR::FASTA::Iterator

TIGR::FASTA::Iterator class for parsing and navigating FASTA format files and streams. An object of this class can parse FASTA records from STDIN and from a pipe.

TIGR::FASTA::Reader

TIGR::FASTA::Reader class for parsing and navigating FASTA format files.

TIGR::FASTA::Record

TIGR::FASTA::Record class describing FASTA records

TIGR::FASTA::Writer

TIGR::FASTA::Writer class for writing TIGR::FASTA::Record objects to a file

TIGR::Foundation

TIGR Foundation object

TIGR::HmmTools

Functions for processing files from HMMer

Provides

TIGR

in Provides.pm.PL

Other files

To install TIGR, copy and paste the appropriate command in to your terminal.

cpanm

cpanm TIGR

CPAN shell

perl -MCPAN -e shell
install TIGR

For more information on module installation, please visit the detailed CPAN module installation guide.

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Documentation

Modules

Provides

Other files

Module Install Instructions