—=head1 NAME
Bio::DB::GFF::Adaptor::memory::iterator - iterator for Bio::DB::GFF::Adaptor::memory
=head1 SYNOPSIS
For internal use only
=head1 DESCRIPTION
This is an internal module that is used by the Bio::DB::GFF in-memory
adaptor to return an iterator across a sequence feature query. The
object has a single method, next_feature(), that returns the next
feature from the query. The method next_seq() is an alias for
next_feature().
=head1 BUGS
None known yet.
=head1 SEE ALSO
L<Bio::DB::GFF>,
=head1 AUTHOR
Lincoln Stein E<lt>lstein@cshl.orgE<gt>.
Copyright (c) 2001 Cold Spring Harbor Laboratory.
This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself.
=cut
$Bio::DB::GFF::Adaptor::memory::iterator::VERSION
=
'1.7.4'
;
use
strict;
# this module needs to be cleaned up and documented
use
Bio::Root::Version;
*next_seq
= \
&next_feature
;
sub
new {
my
$class
=
shift
;
my
(
$data
,
$callback
) =
@_
;
my
$pos
= 0;
return
bless
{
data
=>
$data
,
pos
=>
$pos
,
callback
=>
$callback
,
cache
=> []},
$class
;
#return bless [$sth,$callback,[]],$class;
}
sub
next_feature {
my
$self
=
shift
;
return
shift
@{
$self
->{cache}}
if
@{
$self
->{cache}};
my
$data
=
$self
->{data} or
return
;
my
$callback
=
$self
->{callback};
my
$features
;
while
(1) {
my
$feature
=
$data
->[
$self
->{
pos
}++];
if
(
$feature
) {
$features
=
$callback
->(@{
$feature
});
last
if
$features
;
}
else
{
$features
=
$callback
->();
undef
$self
->{
pos
};
undef
$self
->{data};
undef
$self
->{cache};
last
;
}
}
$self
->{cache} =
$features
or
return
;
shift
@{
$self
->{cache}};
}
1;