NAME

App::RL - operating chromosome runlist files

SYNOPSIS

            

              
              
runlist <command> [-?h] [long options...]
        -? -h --help  show help
Available commands:
  commands: list the application's commands
      help: display a command's help screen
   combine: combine multiple sets of runlists
   compare: compare 2 chromosome runlists
   convert: convert runlist file to position file
     cover: output covers of positions on chromosomes
  coverage: output detailed depthes of coverages on chromosomes
    genome: convert chr.size to full genome runlists
     merge: merge runlist yaml files
  position: compare runlists against positions
      some: extract some records from YAML file
      span: operate spans in a YAML file
     split: split runlist yaml files
      stat: coverage statistics on chromosomes for runlists
     stat2: coverage statistics on another runlist for runlists
            
          

See runlist commands for usage information.

AUTHOR

Qiang Wang <wang-q@outlook.com>

COPYRIGHT AND LICENSE

This software is copyright (c) 2015- by Qiang Wang.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.