App::Sandy::Command::Expression::Add - expression subcommand class. Add an expression-matrix to the database.
version 0.25
sandy expression add -f <entry name> [-s <source>] FILE Arguments: an expression-matrix file Mandatory options: -f, --expression-matrix an expression-matrix name Options: -h, --help brief help message -H, --man full documentation -v, --verbose print log messages -s, --source expression-matrix source detail for database
Add an expression-matrix to the database. A valid expression-matrix is a file with two columns. The first column is for the seqid and the second column is for the raw count. The counts will be treated as weights.
A two-columns whitespace separated file, where the first column is the transcript id, or the gene id, and the second column is the raw counts.
===> my_custom_expression_matrix.txt #feature count ENST00000000233.9 2463 ENST00000000412.7 2494 ENST00000000442.10 275 ENST00000001008.5 5112 ENST00000001146.6 637 ENST00000002125.8 660 ENST00000002165.10 478 ENST00000002501.10 57 ENST00000002596.5 183 ...
Thiago L. A. Miller <tmiller@mochsl.org.br>
J. Leonel Buzzo <lbuzzo@mochsl.org.br>
Felipe R. C. dos Santos <fsantos@mochsl.org.br>
Helena B. Conceição <hconceicao@mochsl.org.br>
Rodrigo Barreiro <rbarreiro@mochsl.org.br>
Gabriela Guardia <gguardia@mochsl.org.br>
Fernanda Orpinelli <forpinelli@mochsl.org.br>
Rafael Mercuri <rmercuri@mochsl.org.br>
Pedro A. F. Galante <pgalante@mochsl.org.br>
This software is Copyright (c) 2023 by Teaching and Research Institute from Sírio-Libanês Hospital.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007
To install App::Sandy, copy and paste the appropriate command in to your terminal.
cpanm
cpanm App::Sandy
CPAN shell
perl -MCPAN -e shell install App::Sandy
For more information on module installation, please visit the detailed CPAN module installation guide.