Bio::BioStudio::DB::MySQL
Version 2.10
BioStudio functions for MySQL database interaction.
Sarah Richardson <SMRichardson@lbl.gov>.
Fetches a Bio::DB::SeqFeature::Store interface for a database containing the annotations of the argument chromosome. An optional write flag sets whether or not the interface will support adding, deleting, or modifying features.
Returns: A L<Bio::DB::SeqFeature::Store> object.
This function returns a hash reference containing all BioStudio database names as keys.
This function creates a database that is ready to be loaded with chromosome data. It does NOT load that database.
This function loads a database (which must have been previously created, see create_database()) with a GFF file. The file is the one corresponding to the first argument provided unless the alternate is defined, in which case the file corresponding to the third argument is loaded into a database named after the first argument.
Arguments: Optionally, the name of an alternate chromosome to be loaded using the database name provided in the first argument
This function drops the database associated with a BioStudio chromosome.
Execute an arbitrary command on an arbitrary database
Execute a search command on an arbitrary database
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To install Bio::BioStudio, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::BioStudio
CPAN shell
perl -MCPAN -e shell install Bio::BioStudio
For more information on module installation, please visit the detailed CPAN module installation guide.