- LICENSE AND COPYRIGHT
Bio::CUA::Seq - a module processing sequence object
use Bio::CUA::Seq; my $obj = Bio::CUA::Seq->new( -seq => 'AGGTGCCG...', -id => 'test_id', -desc => 'sequence description' ); # available methods $obj->length; # get sequence length $obj->id; # get sequence id $obj->desc; # get sequence description $obj->seq; # get sequence string
This module is called by Bio::CUA::SeqIO to create sequence object which has some basic methods required by the modules in the distribution http://search.cpan.org/dist/Bio-CUA/. The purpose of this module is to increase the portability of the distribution.
Title : new Usage : my $obj = Bio::CUA::Seq->new(%params); Function: create sequence object Returns : an object of this class Args : arguments are specified in a hash and acceptable keys as follows:
the sequence string for the object, which can only be characters in the range A-Z and a-z. Other characters are eliminated by the method.
the sequence name
extra description of this sequence
Title : length Usage : my $len = $self->length; Function: get the length of the sequence Returns : an integer Args : None
Title : id Usage : my $id = $self->id; Function: get sequence name/id Returns : a string Args : None
Title : desc Usage : my $desc = $self->desc Function: get sequence description Returns : a string or undef if not exist Args : None
Title : seq Usage : my $seq = $self->seq Function: get sequence string of the object Returns : a string Args : None
<zhangz.sci at gmail.com>
Please report any bugs or feature requests to
bug-bio-cua at rt.cpan.org, or through the web interface at http://rt.cpan.org/NoAuth/ReportBug.html?Queue=Bio-CUA. I will be notified, and then you'll automatically be notified of progress on your bug as I make changes.
You can find documentation for this module with the perldoc command.
You can also look for information at:
RT: CPAN's request tracker (report bugs here)
AnnoCPAN: Annotated CPAN documentation
Copyright 2015 Zhenguo Zhang.
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.