Bio::Gonzales - Speedy functions to manipulate biological data
Biological data analysis is often cumbersome: most tasks are very similar, but still there is a small difference between them. Bio::Gonzales gives you the modules and functions that make data crunching easy and speedy, while keeping the flexibility.
It should not be complete, the focus relies on a few standard formats. If one is burning in format hell, Bio::Perl might be a much better complement.
To outline the simple usage, here an example to read a fasta sequence file into a array of Bio::Gonzales::Seq objects.
use Bio::Gonzales::Seq::IO qw/faslurp/;
my @seqs = faslurp('sequences.fa');
# Oh, f**k, somebody sent me gzipped fasta files!
# Calm down! Gonzales has a speedy answer for that:
my @seqs = faslurp('sequences.fa.gz');
Motivation for this package is the lack of speed or ease of use or both in other modules. The main branches are grouped into
Joachim Bargsten, <jwb at cpan.org>
<jwb at cpan.org>
Please report any bugs or feature requests to bug-bargsten-bio at rt.cpan.org, or through the web interface at http://rt.cpan.org/NoAuth/ReportBug.html?Queue=Bio-Gonzales. I will be notified, and then you'll automatically be notified of progress on your bug as I make changes.
bug-bargsten-bio at rt.cpan.org
You can find documentation for this module with the perldoc command.
You can also look for information at:
RT: CPAN's request tracker
AnnoCPAN: Annotated CPAN documentation
Copyright 2010 Joachim Bargsten.
This program is free software; you can redistribute it and/or modify it under the terms of either: the GNU General Public License as published by the Free Software Foundation; or the Artistic License.
See http://dev.perl.org/licenses/ for more information.
To install Bio::Gonzales, copy and paste the appropriate command in to your terminal.
perl -MCPAN -e shell
For more information on module installation, please visit the detailed CPAN module installation guide.