Author image Haizhou Liu
and 1 contributors

NAME

    Bio::KEGG::ko- Perl module to fetch details of KEGG file 'pathway'.

DESCRIPTION

    Fetch data from a Bio::KEGGI::pathway object

AUTHOR

    Haizhou Liu, zeroliu-at-gmail-dot-com

VERSION

    0.1.5
    

METHODS

ec

    Name:   ec
    Desc:   Get ecs for KEGG entry ENZYME
    
            $ra_ec = [ $ec, ... ];
            
    Usage:  $o_kegg->ec()
    Args:
    Return: A reference to an array
    

drug

    Name:   drug
    Desc:   Get drug ids for KEGG pathway entry DRUG.
    
            $ra_drug = [ $drug, ... ];
            
    Usage:  $o_kegg->drug()
    Args:
    Return: A reference to an array

map

    Name:   map
    Desc:   Get KEGG pathway entry PATHWAY_MAP.
    Usage:  $o_kegg->map()
    Args:
    Return: A string

organism

    Name:   organism
    Desc:   Get organism description for KEGG pathway entry ORGANISM.
    Usage:  $o_kegg->organism()
    Args:
    Return: A string

org

    Name:   org
    Desc:   Get abbrivated oeganism information for KEGG pathway entry
            ORGANISM.
    Usage:  $o_kegg->org()
    Args:
    Return: A string
    

gene

    Name:   gene
    Disc:   Get KEGG entry GENE information
        
        $rh_gene = {
            'entry' => $entry,
            'name'  => [ $name, ... ],
            'ko'    => [ $ko, ... ],
            'ec'    => [ $ec, ... ],
        };
    
    Usage:  $o_kegg->gene()
    Args:
    Return: A reference to a hash.
    Note:   This method returns different from the method of Bio::KEGG::ko.
    

orthology

    Name:   orthology
    Disc:   Get orthology ids for KEGG entry ORTHOLOGY.
        
        $ra_orthology = [ $orth_id, ... ];
    
    Usage:  $o_kegg->orthology
    Args:
    Return: A reference to an array
    

reaction

    Name:   reaction
    Desc:   Get reaction ids for KEGG entry REACTION
    
        $ra_reaction = [ $reaction_id, ... ];
        
    Usage:  $o_kegg->reaction()
    Args:
    Return: A reference to an array
    

compound

    Name:   compound
    Disc:   Get compound ids for KEGG entry COMPOUND
        
        $ra_compound = [ $compound_id, ... ];
    
    Usage:  $o_kegg->compound()
    Args:
    Return: A reference to an array
    

rel_pathway

    Name:   compound
    Disc:   Get related pathway ids for KEGG entry REL_PATHWAY
        
        $ra_rel_pathway = [ $rel_pathway_id, ... ];
    
    Usage:  $o_kegg->rel_pathway()
    Args:
    Return: A reference to an array

ko_pathway

    Name:   ko_pathway
    Disc:   Get related ko pathway id for KEGG entry KO_PATHWAY
    Usage:  $o_kegg->compound()
    Args:
    Return: A string