Bio::MLST::SearchForFiles - Take in a species name and get the allele and profile files.
Take in a species name and get the allele and profile files.
use Bio::MLST::SearchForFiles; my $search_results = Bio::MLST::SearchForFiles->new( species_name => 'coli', base_directory => '/path/to/mlst/data' ); $search_results->allele_filenames(); $search_results->profiles_filename();
Return the path to the allele files
Return the path to the profile file
Andrew J. Page <email@example.com>
This software is Copyright (c) 2012 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007