- COPYRIGHT AND LICENSE
Bio::MLST::SequenceType - Take in a list of matched alleles and look up the sequence type from the profile.
Take in a list of matched alleles and look up the sequence type from the profile.
use Bio::MLST::SequenceType; my $st = Bio::MLST::SequenceType->new( profiles_filename => 't/data/Escherichia_coli_1/profiles/escherichia_coli.txt', matching_names => ['adk-2','purA-3','recA-1'], non_matching_names =>  ); $st->sequence_type();
Maps the allele name to the corresponding locus sequence number.
Returns the sequence type (an integer).
Returns the nearest matching sequence type if there is no exact match, randomly chosen if there is more than 1 with equal identity.
Andrew J. Page <email@example.com>
This software is Copyright (c) 2012 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007