NAME

Bio::Network::IO::psi::intact - module to handle variations in PSI MI format from the IntAct database

SYNOPSIS

Do not use this module directly, use Bio::Network::IO. For example:

  my $io = Bio::Network::IO->new(-format => 'psi',
                                 -source => 'intact',
                                 -file   => 'data.xml');

  my $network = $io->next_network;

DESCRIPTION

There are slight differences between PSI MI files offered by various public databases. The Bio::Network::IO::psi* modules have methods for handling these variations. To load a module like this use the optional "-source" argument when creating a new Bio::Network::IO object.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:

  http://bugzilla.open-bio.org/

AUTHORS

Brian Osborne bosborne at alum.mit.edu