• NAME
• SYNOPSIS
• DESCRIPTION
• METHODS
  • CONSTRUCTOR
  • SERIALIZERS
• SEE ALSO
• CITATION

NAME

Bio::Phylo::NeXML::Meta::XMLLiteral - Annotation value adaptor, no direct usage

SYNOPSIS

 # no direct usage

DESCRIPTION

No direct usage, is used internally by Bio::Phylo::NeXML::Meta to wrap objects into a common adaptor class for serialization to XML.

METHODS

CONSTRUCTOR

new()

 Type    : Constructor
 Title   : new
 Usage   : my $lit = Bio::Phylo::NeXML::Meta::XMLLiteral->new($obj);
 Function: Initializes a Bio::Phylo::NeXML::Meta::XMLLiteral object.
 Returns : A Bio::Phylo::NeXML::Meta::XMLLiteral object.
 Args    : An object (or array ref of objects) to wrap,
           either a 'RDF::Core::Model' (or subclass),
           an 'XML::XMLWriter' or (subclass) or any
           of the following serialization methods
           used for duck-typing one of the following classes:
               Bio::Phylo                        => to_xml, 
               XML::DOM, XML::GDOME, XML::LibXML => toString, 
               XML::Twig                         => sprint,
               XML::DOM2                         => xmlify, 
               XML::DOMBacked                    => as_xml,
               XML::Handler                      => dump_tree, 
               XML::Element                      => as_XML
               XML::API                          => _as_string, 
               XML::Code                         => code           
 

SERIALIZERS

to_xml()

Serializes invocant to xml.

 Type    : Serializer
 Title   : to_xml
 Usage   : my $xml = $obj->to_xml;
 Function: Turns the invocant object (and its descendants) into an XML string.
 Returns : SCALAR
 Args    : NONE

SEE ALSO

There is a mailing list at https://groups.google.com/forum/#!forum/bio-phylo for any user or developer questions and discussions.

Bio::Phylo::NeXML::Meta

Bio::Phylo::Manual

Also see the manual: Bio::Phylo::Manual and http://rutgervos.blogspot.com.

CITATION

If you use Bio::Phylo in published research, please cite it:

Rutger A Vos, Jason Caravas, Klaas Hartmann, Mark A Jensen and Chase Miller, 2011. Bio::Phylo - phyloinformatic analysis using Perl. BMC Bioinformatics 12:63. http://dx.doi.org/10.1186/1471-2105-12-63